Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.5e-104 382.1 189 100.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 4.2e-96 354.8 189 93.7
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 6.1e-95 350.9 189 90.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.7e-94 347.4 189 89.4
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 3.5e-90 335.1 189 86.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 5.5e-88 327.8 189 87.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 9.4e-88 327.0 189 86.2
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.2e-87 326.6 189 86.2
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.6e-85 318.9 189 84.7
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.4e-85 318.5 189 85.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 8.3e-84 313.9 189 84.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 3.1e-83 312.0 190 83.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 3.5e-82 308.5 189 77.8
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-81 306.6 198 81.3
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.8e-81 305.1 196 81.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 7.2e-80 300.8 205 73.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 7.2e-80 300.8 189 81.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.7e-65 253.1 186 67.2
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.0e-65 251.5 186 66.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.5e-64 250.0 185 67.0
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.5e-64 249.2 188 64.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 3.6e-63 245.4 190 64.2
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.8e-62 243.0 190 63.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.3e-62 242.7 190 64.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.0e-62 241.9 190 63.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.0e-61 239.6 187 67.4
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.4e-61 238.8 190 64.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.4e-61 238.4 190 62.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 7.5e-61 237.7 187 63.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.9e-60 235.7 186 63.4
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 4.9e-60 235.0 195 59.5
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.9e-59 233.0 186 61.3
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.2e-59 232.3 144 75.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.4e-59 231.5 186 61.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 7.0e-59 231.1 187 61.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-58 230.3 222 54.1
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 3.5e-58 228.8 141 72.3
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.6e-58 228.4 190 60.5
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 7.8e-58 227.6 185 61.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.3e-57 226.9 186 59.7
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-57 226.5 191 60.2
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 3.0e-57 225.7 184 62.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-57 225.7 128 80.5
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.9e-57 225.3 186 58.6
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 5.1e-57 224.9 190 59.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 6.6e-57 224.6 186 60.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 8.6e-57 224.2 189 59.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.1e-56 223.8 143 71.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.1e-56 223.8 186 59.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.9e-56 223.0 186 59.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.9e-56 223.0 191 62.3
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.9e-56 223.0 141 70.9
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.5e-56 222.6 187 61.0
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-56 222.2 114 92.1
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.3e-56 222.2 157 64.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.3e-56 222.2 141 73.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.3e-56 221.9 186 59.7
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.6e-56 221.5 189 58.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.6e-56 221.5 186 59.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 5.6e-56 221.5 141 69.5
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.1e-55 219.5 186 59.1
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 2.8e-55 219.2 186 59.1
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.6e-55 218.8 130 78.5
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 4.7e-55 218.4 129 75.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.7e-55 218.4 194 54.6
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 4.7e-55 218.4 192 56.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.1e-55 217.6 141 70.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.1e-54 217.2 196 57.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.4e-54 216.9 186 57.5
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.3e-54 216.1 173 61.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.1e-54 215.7 130 76.2
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 4.0e-54 215.3 129 74.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 4.0e-54 215.3 142 70.4
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.2e-54 214.9 136 71.3
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.8e-54 214.5 130 75.4
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 6.8e-54 214.5 186 58.6
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 6.8e-54 214.5 186 59.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.2e-53 213.8 187 56.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.6e-53 212.6 189 57.7
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.6e-53 212.6 138 68.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.4e-53 212.2 130 73.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.4e-53 212.2 186 57.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 4.4e-53 211.8 141 68.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.4e-53 211.8 145 70.3
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 5.8e-53 211.5 199 53.8
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 5.8e-53 211.5 187 55.6
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 7.5e-53 211.1 194 53.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 7.5e-53 211.1 193 56.0
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 9.9e-53 210.7 141 68.1
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 9.9e-53 210.7 185 58.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-52 210.3 185 55.7
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.7e-52 209.9 186 57.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-52 209.5 186 55.9
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.9e-52 209.1 130 72.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.7e-52 208.8 147 66.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 4.9e-52 208.4 186 55.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.9e-52 208.4 186 55.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 8.3e-52 207.6 135 72.6
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 8.3e-52 207.6 137 69.3
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-51 207.2 186 55.9
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-51 206.5 186 55.4
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.2e-51 205.7 194 55.2
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.2e-50 203.8 129 72.9
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.2e-50 203.8 151 65.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.2e-50 203.8 172 59.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.6e-50 201.8 227 49.8
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 7.8e-50 201.1 189 50.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.9e-49 198.7 186 57.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.9e-49 198.7 193 52.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 5.1e-49 198.4 139 65.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 7.3e-48 194.5 129 70.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 9.5e-48 194.1 167 58.1
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.2e-47 193.7 190 53.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.1e-47 193.0 115 73.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.1e-47 193.0 251 44.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-46 190.7 129 69.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.1e-46 190.7 131 68.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 5.2e-46 188.3 136 65.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.4e-45 185.7 163 58.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 3.4e-45 185.7 128 71.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.9e-45 184.1 160 58.8
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.8e-44 182.2 273 39.9
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.5e-40 170.2 147 56.5
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 9.9e-37 157.5 123 58.5
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.1e-35 154.1 124 56.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.4e-35 151.8 87 74.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.0e-33 147.5 182 40.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.7e-33 144.4 91 71.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 7.3e-32 141.4 72 88.9
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-31 139.4 80 81.2
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-30 136.0 86 70.9
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 5.8e-29 131.7 130 54.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.4e-27 127.1 116 53.4
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 5.4e-27 125.2 79 68.4
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-23 113.6 133 52.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.6e-23 113.6 72 66.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.1e-23 113.2 65 73.8
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 5.8e-21 105.1 103 45.6
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.3e-17 94.0 59 67.8
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-17 94.0 115 47.0
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.0e-17 92.8 113 38.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.4e-13 79.3 93 46.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 5.7e-08 62.0 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.8e-06 57.0 52 48.1


User provided reference genes

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