Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.7e-165 584.7 281 100.0
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 4.3e-161 571.2 281 98.2
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.6e-160 569.3 277 97.8
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.9e-156 555.8 284 94.0
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 5.4e-156 554.3 279 94.6
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 8.6e-154 547.0 279 93.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 2.8e-152 542.0 281 92.5
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 8.9e-151 537.0 283 91.9
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 2.6e-150 535.4 281 91.1
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 2.6e-150 535.4 288 90.3
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 4.4e-150 534.6 289 90.0
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 5.8e-150 534.3 294 88.4
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 2.9e-149 531.9 278 91.4
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 6.4e-149 530.8 278 88.1
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 5.1e-146 521.2 285 87.4
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 4.3e-145 518.1 282 86.9
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 2.1e-144 515.8 283 86.6
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 4.0e-143 511.5 283 85.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 4.0e-143 511.5 276 86.6
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 3.9e-138 495.0 279 82.4
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.5e-137 492.3 274 83.2
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 4.3e-137 491.5 277 82.3
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 5.6e-137 491.1 273 83.9
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 3.6e-136 488.4 274 81.4
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 3.6e-136 488.4 275 81.8
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 6.2e-136 487.6 279 81.0
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 6.2e-136 487.6 271 83.0
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 8.1e-136 487.3 279 81.4
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 8.1e-136 487.3 273 83.2
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 8.1e-136 487.3 276 80.4
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.1e-135 486.9 277 81.2
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.4e-135 486.5 273 83.2
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 4.0e-135 485.0 282 80.5
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 5.3e-135 484.6 277 82.3
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 6.9e-135 484.2 279 80.6
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 9.0e-135 483.8 275 81.8
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 9.0e-135 483.8 278 80.6
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 9.0e-135 483.8 277 80.5
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 9.0e-135 483.8 275 81.1
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 9.0e-135 483.8 271 83.0
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 9.0e-135 483.8 277 80.9
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.5e-134 483.0 277 81.6
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.5e-134 483.0 275 81.1
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.6e-134 482.3 279 80.6
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 2.6e-134 482.3 273 82.4
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 3.4e-134 481.9 277 80.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 5.8e-134 481.1 287 81.2
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 5.8e-134 481.1 275 82.5
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 5.8e-134 481.1 278 81.7
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 9.9e-134 480.3 277 81.2
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.3e-133 479.9 278 80.6
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.3e-133 479.9 279 80.6
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.7e-133 479.6 277 81.2
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 2.2e-133 479.2 278 81.3
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 3.8e-133 478.4 276 77.5
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.4e-133 477.6 274 80.3
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 6.4e-133 477.6 275 80.0
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.9e-132 476.1 272 82.4
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 3.2e-132 475.3 304 75.0
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 5.4e-132 474.6 282 79.1
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.2e-131 473.4 277 78.7
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 7.9e-131 470.7 276 76.4
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 1.0e-130 470.3 299 75.9
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.0e-130 470.3 276 81.2
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 1.0e-130 470.3 276 76.1
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.3e-130 469.9 271 78.2
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 1.3e-130 469.9 276 81.2
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.0e-130 468.8 276 77.5
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.0e-130 468.8 276 77.5
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 3.9e-130 468.4 276 76.1
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 5.1e-130 468.0 276 77.9
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 8.7e-130 467.2 275 79.3
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 8.7e-130 467.2 275 79.3
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.1e-129 466.8 275 79.6
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 1.1e-129 466.8 277 79.1
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 4.3e-129 464.9 279 77.8
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 5.6e-129 464.5 306 74.2
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 5.6e-129 464.5 277 79.4
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 2.1e-128 462.6 273 76.9
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 4.8e-128 461.5 277 78.0
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 6.2e-128 461.1 277 76.2
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.1e-127 460.3 277 78.0
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 1.4e-127 459.9 276 79.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 3.1e-127 458.8 278 78.1
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 3.4e-126 455.3 259 83.4
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.7e-125 453.0 273 77.7
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 4.9e-125 451.4 252 82.9
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 1.1e-124 450.3 278 77.7
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.4e-124 449.1 277 78.7
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.3e-124 447.2 275 75.6
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.6e-123 446.4 296 72.6
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 4.6e-123 444.9 275 75.6
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 2.3e-122 442.6 315 68.6
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 4.3e-121 438.3 276 73.9
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 9.6e-121 437.2 279 72.8
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 2.1e-120 436.0 299 75.9
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.8e-120 435.6 315 67.0
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 6.9e-119 431.0 276 73.2
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.2e-118 430.3 213 94.4
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 5.8e-118 427.9 275 74.2
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 2.9e-117 425.6 274 72.3
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 1.9e-116 422.9 276 71.7
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 7.1e-116 421.0 277 72.9
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.7e-115 419.1 275 69.8
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 2.3e-114 416.0 303 67.3
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 4.3e-113 411.8 235 81.3
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 5.7e-113 411.4 273 71.1
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.3e-109 400.2 240 78.3
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 3.2e-108 395.6 358 58.4
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.0e-106 390.6 212 86.3
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 4.5e-102 375.2 278 66.2
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.7e-101 373.2 219 79.0
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 2.2e-101 372.9 278 61.2
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.2e-96 354.4 197 82.7
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 2.5e-92 342.8 282 57.4
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 9.4e-92 340.9 191 83.2
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.0e-90 335.9 221 73.3
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 2.2e-88 329.7 272 57.7
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 4.0e-82 308.9 189 75.7
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 4.0e-82 308.9 189 75.7
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 5.7e-81 305.1 228 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.0e-77 294.3 226 60.6
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 1.2e-75 287.3 280 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 5.2e-66 255.4 183 65.0
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 3.7e-64 249.2 297 47.1
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.8e-63 246.9 156 76.9
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 5.9e-62 241.9 151 72.2
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.2e-57 227.6 212 50.0
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 1.7e-56 223.8 131 78.6
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 6.4e-56 221.9 264 47.3
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 2.0e-46 190.3 239 46.9
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 8.9e-42 174.9 98 80.6
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 1.1e-39 167.9 272 37.1
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 2.5e-36 156.8 211 39.8
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 3.0e-29 133.3 107 61.7
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 1.1e-28 131.3 89 68.5
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 9.3e-15 85.1 67 59.7
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.0e-13 81.6 46 82.6
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 5.1e-13 79.3 45 82.2


User provided reference genes

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