Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 3.7e-284 981.1 585 100.0
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 1.6e-250 869.4 590 88.3
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 7.9e-218 760.8 622 76.4
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 1.9e-216 756.1 591 79.2
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 1.4e-214 750.0 599 76.6
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 2.0e-213 746.1 598 76.3
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 6.1e-202 708.0 589 73.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.7e-199 699.9 583 72.9
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 4.5e-197 691.8 589 71.8
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 8.8e-193 677.6 595 70.8
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 8.8e-193 677.6 595 70.4
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 4.4e-192 675.2 595 70.6
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 1.2e-168 597.4 635 66.5
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.7e-132 477.2 607 55.7
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 1.6e-125 454.1 642 54.5
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 2.1e-93 347.4 643 42.3
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 8.2e-90 335.5 652 42.5
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 7.7e-88 328.9 628 41.9
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.1e-86 325.1 639 41.5
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.4e-86 322.0 637 41.1
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.7e-85 320.5 647 41.0
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 3.0e-84 317.0 643 40.7
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 3.9e-84 316.6 642 40.5
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 3.9e-84 316.6 649 41.6
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 8.8e-84 315.5 638 40.6
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 9.7e-83 312.0 646 41.0
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 5.3e-81 306.2 647 39.9
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 1.7e-79 301.2 647 40.0
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.7e-79 301.2 635 39.1
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 3.8e-79 300.1 647 40.0
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 5.5e-78 296.2 651 39.5
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 5.5e-78 296.2 649 40.2
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.2e-77 295.0 648 40.1
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.0e-76 292.0 631 40.3
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 1.8e-76 291.2 645 40.8
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 4.0e-76 290.0 647 39.3
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.2e-75 288.5 642 41.1
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 5.7e-75 286.2 660 39.2
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.7e-74 284.6 648 40.1
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 6.3e-74 282.7 610 40.7
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 8.3e-74 282.3 643 40.1
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 1.1e-73 282.0 631 39.3
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 1.1e-73 282.0 657 38.5
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.1e-73 282.0 644 40.7
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 7.0e-73 279.3 569 42.2
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 9.1e-73 278.9 635 38.7
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.0e-71 275.4 642 38.0
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 1.0e-71 275.4 649 37.3
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 2.9e-71 273.9 650 38.8
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.5e-70 271.6 627 37.6
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.4e-70 268.9 656 38.1
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 9.4e-70 268.9 633 39.8
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.6e-69 268.1 642 38.5
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 1.0e-68 265.4 647 38.0
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 1.0e-68 265.4 665 38.2
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 6.8e-68 262.7 639 39.0
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 1.2e-67 261.9 638 38.7
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 2.6e-67 260.8 641 37.6
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 1.3e-66 258.5 610 39.8
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 1.7e-66 258.1 651 37.2
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 1.1e-65 255.4 648 36.7
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.1e-65 253.4 648 36.9
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 4.1e-65 253.4 620 38.7
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 4.1e-65 253.4 644 36.3
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 9.1e-65 252.3 733 35.6
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 1.2e-64 251.9 679 36.2
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 1.6e-64 251.5 590 38.1
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.6e-64 251.5 654 36.1
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 2.0e-64 251.1 647 35.5
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 2.9e-63 247.3 628 38.4
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 6.6e-63 246.1 650 37.1
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.9e-62 244.6 644 38.8
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 2.1e-61 241.1 629 38.3
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 4.7e-61 240.0 673 36.4
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 5.2e-60 236.5 655 35.6
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 6.8e-60 236.1 651 37.8
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 6.3e-58 229.6 645 37.2
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 5.4e-57 226.5 667 37.9
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 2.0e-56 224.6 644 34.8
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 2.0e-56 224.6 618 37.2
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 3.5e-56 223.8 641 36.2
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 4.5e-56 223.4 617 36.8
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 1.5e-54 218.4 631 36.8
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 2.5e-54 217.6 552 39.5
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 3.1e-52 210.7 653 36.6
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.5e-51 208.4 623 38.0
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 4.4e-51 206.8 557 41.7
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 5.8e-51 206.5 645 34.0
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 5.8e-51 206.5 647 34.0
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 1.3e-50 205.3 665 36.7
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 1.7e-50 204.9 621 39.0
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 6.4e-50 203.0 663 33.9
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 6.4e-50 203.0 623 34.7
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 4.1e-49 200.3 670 38.5
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 7.0e-49 199.5 627 33.8
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 9.2e-49 199.1 628 34.9
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 2.0e-48 198.0 617 35.0
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 3.5e-48 197.2 603 36.5
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 1.0e-47 195.7 623 34.7
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 1.0e-47 195.7 630 34.0
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 2.3e-47 194.5 651 33.8
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 3.0e-47 194.1 618 35.4
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 1.5e-46 191.8 596 35.1
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 1.9e-46 191.4 595 34.8
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 4.3e-46 190.3 622 33.9
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 1.6e-45 188.3 623 35.5
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 7.5e-43 179.5 622 32.8
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 4.1e-41 173.7 662 37.0
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 2.1e-40 171.4 634 35.3
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 4.6e-40 170.2 678 32.7
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 2.3e-39 167.9 629 31.3
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 5.1e-39 166.8 354 37.6
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 1.2e-37 162.2 710 31.5
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.2e-35 155.6 618 32.4
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 2.6e-35 154.5 604 32.5
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.9e-34 151.0 656 30.0
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 3.7e-34 150.6 255 41.6
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 2.1e-32 144.8 306 42.8
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.7e-32 144.4 667 29.2
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 4.6e-32 143.7 340 39.4
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 3.3e-30 137.5 542 33.4
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 2.9e-26 124.4 258 39.1
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 1.0e-23 115.9 196 42.3
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 8.1e-21 106.3 321 33.3
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 9.9e-19 99.4 190 36.8
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 7.8e-16 89.7 539 29.7
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 3.9e-15 87.4 407 31.9
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 8.7e-15 86.3 209 34.4
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 8.1e-13 79.7 103 53.4
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 6.9e-12 76.6 104 47.1
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 7.6e-11 73.2 230 37.4
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 9.9e-11 72.8 303 34.7
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 8.4e-10 69.7 625 26.1
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 3.2e-09 67.8 101 48.5
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 4.2e-09 67.4 321 30.2
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 6.0e-08 63.5 426 27.9
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 1.8e-07 62.0 428 28.7
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 3.9e-07 60.8 277 29.6
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 3.9e-07 60.8 277 29.6
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 3.9e-07 60.8 107 43.9
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 5.1e-07 60.5 428 28.5
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 6.7e-07 60.1 680 25.1
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 6.7e-07 60.1 266 29.7
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.1e-06 59.3 308 34.1
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 1.1e-06 59.3 93 48.4
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.9e-06 58.5 93 44.1
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.9e-06 58.5 251 30.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 3.3e-06 57.8 99 42.4
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 5.6e-06 57.0 247 28.3
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 5.6e-06 57.0 250 29.6
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 7.4e-06 56.6 93 46.2
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 9.6e-06 56.2 93 45.2
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 9.6e-06 56.2 120 41.7


User provided reference genes

Program Settings