Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 0.0e+00 1342.8 727 100.0
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 0.0e+00 1276.9 727 95.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 0.0e+00 1179.5 727 88.6
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 0.0e+00 1155.2 727 87.1
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 0.0e+00 1140.9 728 85.9
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 0.0e+00 1135.9 727 85.3
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 0.0e+00 1108.2 727 84.0
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 0.0e+00 1094.0 730 83.7
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 0.0e+00 1084.3 730 83.2
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 6.0e-308 1060.4 728 81.5
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 7.3e-306 1053.5 730 81.4
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 7.3e-306 1053.5 730 81.4
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.0e-291 1006.5 729 76.1
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 2.3e-283 978.8 728 75.8
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 9.1e-256 887.1 725 66.5
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 4.5e-255 884.8 730 67.0
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 3.8e-254 881.7 725 66.1
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 3.2e-253 878.6 725 66.3
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 3.2e-253 878.6 725 65.9
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 2.8e-249 865.5 727 65.3
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 7.0e-248 860.9 697 67.3
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 2.9e-246 855.5 725 65.0
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 6.5e-246 854.4 726 65.0
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 8.0e-244 847.4 725 64.6
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.2e-242 843.6 725 64.6
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 5.4e-240 834.7 725 63.0
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 1.6e-239 833.2 813 58.9
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 2.0e-239 832.8 727 63.3
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 7.7e-239 830.9 733 64.9
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 5.0e-238 828.2 728 64.0
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.6e-236 823.2 725 62.1
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 8.0e-236 820.8 754 61.4
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.8e-235 819.7 726 62.1
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 4.0e-235 818.5 727 62.6
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 6.8e-235 817.8 751 63.0
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 1.5e-234 816.6 725 62.9
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 5.7e-234 814.7 725 63.6
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 2.2e-233 812.8 726 62.7
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 3.7e-233 812.0 725 62.2
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 6.3e-233 811.2 731 62.8
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 8.3e-233 810.8 731 63.2
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 7.0e-232 807.7 727 62.6
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 1.2e-231 807.0 727 62.0
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 1.6e-231 806.6 727 62.6
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 5.9e-231 804.7 728 63.0
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 7.8e-231 804.3 729 60.8
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.1e-229 800.4 726 62.0
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 4.3e-229 798.5 726 62.4
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 2.8e-228 795.8 727 61.3
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 3.6e-228 795.4 734 61.2
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 1.0e-227 793.9 725 61.5
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.2e-226 790.4 728 61.1
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.0e-226 789.6 729 61.5
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 2.0e-226 789.6 669 66.5
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 2.9e-225 785.8 726 61.6
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 9.2e-224 780.8 726 60.9
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 2.0e-223 779.6 735 60.7
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 6.0e-223 778.1 728 61.7
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 3.9e-222 775.4 726 60.6
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 7.3e-221 771.2 710 61.0
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 3.6e-220 768.8 726 59.4
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 4.0e-219 765.4 726 59.5
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 3.4e-218 762.3 727 59.0
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 1.7e-217 760.0 716 59.8
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 7.8e-215 751.1 737 57.4
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 6.6e-214 748.0 726 58.0
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 6.6e-214 748.0 729 58.6
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 8.6e-214 747.7 796 56.3
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 1.5e-213 746.9 728 57.3
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 4.3e-213 745.3 736 57.9
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 5.6e-213 745.0 704 60.1
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 1.6e-212 743.4 814 54.8
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 5.2e-211 738.4 702 59.5
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 2.7e-207 726.1 699 59.4
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.4e-202 709.1 747 55.3
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.6e-199 700.3 725 55.7
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.7e-199 699.5 727 57.5
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.3e-198 697.2 730 57.3
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.1e-197 694.1 671 60.1
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 9.6e-197 691.0 702 56.4
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.5e-194 683.7 727 55.0
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 8.4e-193 677.9 727 55.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.4e-192 676.4 727 53.9
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.9e-189 666.8 670 56.1
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 2.8e-188 662.9 699 54.1
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 9.3e-184 647.9 777 50.7
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 2.4e-179 633.3 733 51.3
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 5.5e-168 595.5 672 52.8
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 5.5e-168 595.5 731 49.0
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 2.9e-161 573.2 594 56.7
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 3.8e-161 572.8 727 48.3
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 1.0e-142 511.5 575 52.5
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 7.7e-138 495.4 357 73.9
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 8.5e-129 465.3 429 61.3
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.5e-128 464.5 522 53.1
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.1e-123 448.4 359 67.4
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.8e-123 447.6 588 49.1
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.3e-116 424.9 299 74.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.8e-115 421.0 431 57.1
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 5.6e-104 382.9 280 72.1
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 1.9e-99 367.9 379 56.7
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 5.2e-86 323.2 699 34.3
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.9e-81 307.0 343 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 6.6e-81 306.2 727 32.6
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 5.8e-77 293.1 664 31.0
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 1.7e-76 291.6 372 50.3
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 6.0e-74 283.1 446 42.6
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 4.3e-72 276.9 505 39.6
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 6.4e-68 263.1 272 54.4
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 5.4e-67 260.0 707 30.0
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 7.6e-61 239.6 702 28.5
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 2.9e-60 237.7 459 40.7
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.4e-30 138.3 136 58.1
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.0e-25 122.9 82 68.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 4.4e-24 117.5 510 24.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.2e-23 115.2 125 48.8
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.8e-22 112.1 144 47.2
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 3.1e-22 111.3 226 38.5
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.0e-16 92.0 152 39.5
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.4e-16 90.9 55 85.5
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 5.7e-16 90.5 182 35.2
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 4.1e-14 84.3 99 51.5
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 9.1e-14 83.2 104 46.2
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 2.7e-13 81.6 115 39.1
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 5.9e-13 80.5 55 74.5
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 1.3e-12 79.3 68 58.8
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 3.8e-12 77.8 70 54.3
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.8e-12 77.8 236 28.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.1e-10 72.0 93 43.0
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 6.1e-10 70.5 105 45.7
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.1e-06 57.8 41 68.3


User provided reference genes

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