Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 2113.6 1072 100.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 2074.3 1072 97.9
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 2030.0 1072 95.3
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1997.2 1067 93.9
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1993.4 1067 93.3
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1983.0 1067 93.3
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1964.9 1067 92.2
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1949.1 1067 91.8
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1947.9 1067 91.8
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1946.8 1067 91.8
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1946.4 1067 91.8
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1946.4 1067 91.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1869.7 1100 85.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1796.6 1081 82.4
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1773.8 1063 83.0
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1072 76.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1080 74.3
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1618.2 1079 74.2
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1079 73.9
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1080 73.9
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1088 72.8
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1080 73.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1089 73.1
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1090 72.7
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1081 73.4
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1600.5 1084 73.4
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1599.7 1081 73.2
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1598.6 1082 73.2
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1595.1 1076 73.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1594.3 1086 72.9
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1588.2 1088 72.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1587.4 1087 72.3
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1089 71.9
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1072 72.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1089 71.7
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1083 71.9
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1088 71.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1084 72.3
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1083 71.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1573.1 1085 72.8
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1571.6 1083 71.0
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1083 71.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1083 71.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1077 71.8
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1106 70.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1569.3 1077 72.1
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1078 72.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1563.9 1084 71.7
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1091 71.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1560.0 1089 71.3
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1077 71.6
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1081 71.6
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1084 70.5
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1080 71.3
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1554.7 1079 70.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1554.7 1079 70.4
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1083 70.5
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1546.6 1079 70.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1546.2 1099 68.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1545.8 1085 70.5
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1083 70.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1083 70.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1543.5 1084 70.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1542.3 1083 70.4
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1541.9 1084 70.1
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1541.6 1097 70.2
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1080 70.3
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1536.9 1084 69.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1525.4 1075 69.8
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1075 70.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1085 70.2
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1171 66.0
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1520.4 1086 68.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1105 69.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1513.0 1171 65.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1510.4 1089 69.8
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1076 69.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1505.0 1075 69.6
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1504.2 1081 69.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1503.0 1081 69.2
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1076 69.4
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1076 69.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1079 69.6
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1087 68.7
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1088 67.9
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1495.3 1092 68.7
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1491.9 1072 68.8
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1489.2 1076 68.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1488.8 1016 72.9
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1488.0 1081 68.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1485.3 1076 68.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1484.2 1080 67.5
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1481.5 1146 65.1
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1471.1 1083 66.5
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1470.3 1078 68.5
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1469.1 1077 68.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1467.6 993 72.8
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1466.1 1084 68.4
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1463.4 1098 66.5
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1450.3 1076 66.1
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1449.1 1051 68.0
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1425.6 1082 66.3
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1417.5 1095 64.6
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1416.7 1101 65.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1416.0 999 70.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1407.9 983 71.3
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1399.0 1080 64.4
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1372.1 1076 65.4
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1364.4 1101 62.3
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1361.3 1078 64.7
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1290.8 1077 63.1
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1243.4 787 76.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1152.9 1085 53.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1142.5 1073 53.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1137.9 717 78.4
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 671 82.4
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 689 80.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1122.1 1072 52.2
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1122.1 1115 51.4
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1112.1 1081 52.0
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 4.7e-285 984.9 751 66.0
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.1e-276 955.7 831 56.9
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 4.4e-267 925.2 609 74.7
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.2e-265 919.1 812 59.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.0e-244 849.0 945 47.4
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 1.0e-242 844.3 630 68.6
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.2e-234 816.6 499 79.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 5.0e-210 735.7 635 60.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 7.7e-195 685.3 973 43.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.7e-162 577.8 429 67.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.5e-161 574.7 601 52.2
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.3e-146 525.0 303 81.5
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.1e-129 468.8 312 71.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 5.0e-109 400.2 383 54.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.9e-63 248.8 290 47.2
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 6.0e-62 243.8 136 79.4
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.6e-61 240.4 205 58.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 2.1e-59 235.3 244 53.3
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.2e-46 193.0 138 65.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 4.8e-35 154.5 238 40.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 7.9e-30 137.1 133 52.6
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.0e-29 136.7 156 48.1
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 5.1e-29 134.4 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.7e-24 119.4 108 53.7
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.4e-24 117.1 97 60.8
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 3.3e-20 105.1 88 56.8
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.9e-12 79.3 49 67.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 7.4e-12 77.4 45 80.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 9.0e-10 70.5 76 44.7
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 4.5e-09 68.2 126 37.3
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.0e-08 67.0 33 90.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 8.5e-08 63.9 39 76.9
Peaxi162Scf00118g00149 Petunia axillaris HOM05D000418 ORTHO05D000317 9.3e-07 60.5 333 23.4
Nitab4.5_0003390g0010 Nicotiana tabacum HOM05D000418 ORTHO05D000317 2.1e-06 59.3 330 23.3
CAN.G1343.15 Capsicum annuum HOM05D000418 ORTHO05D000317 3.6e-06 58.5 252 24.6
Nitab4.5_0000036g0180 Nicotiana tabacum HOM05D000418 ORTHO05D000317 3.6e-06 58.5 330 22.7
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 3.6e-06 58.5 69 47.8
Nitab4.5_0003478g0010 Nicotiana tabacum HOM05D000418 ORTHO05D000317 4.6e-06 58.2 313 23.6


User provided reference genes

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