Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 0.0e+00 1114.0 559 100.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 0.0e+00 1085.5 559 96.6
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.3e-307 1058.1 559 94.3
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.3e-297 1023.5 559 91.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.3e-297 1023.5 559 91.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.3e-297 1023.5 559 91.1
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.0e-294 1016.1 559 90.0
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 5.7e-290 1000.3 559 88.2
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.4e-288 995.7 560 88.0
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.6e-287 991.5 565 87.3
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.7e-286 988.8 565 86.9
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 5.0e-286 987.3 577 85.3
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 7.2e-285 983.4 572 86.2
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 4.8e-281 970.7 559 85.5
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.5e-261 904.0 557 78.1
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 7.0e-256 887.1 558 78.0
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.6e-255 885.9 559 77.8
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 1.3e-254 882.9 556 77.5
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.2e-253 877.9 559 76.2
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.1e-252 875.5 559 76.6
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.7e-252 874.4 559 76.6
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 8.0e-252 873.6 556 77.0
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.3e-251 872.1 559 76.2
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 3.0e-251 871.7 559 76.2
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 6.8e-251 870.5 556 76.6
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.5e-250 869.4 560 76.1
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.0e-250 869.0 559 76.4
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 3.4e-250 868.2 559 75.7
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.4e-250 868.2 556 76.6
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 4.4e-250 867.8 554 76.5
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 5.7e-250 867.5 560 76.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.7e-249 865.9 556 76.3
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 6.3e-249 864.0 556 76.1
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.4e-248 862.8 564 74.8
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 7.0e-248 860.5 555 76.8
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 7.0e-248 860.5 556 75.2
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 2.0e-247 859.0 553 74.7
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.7e-247 858.6 540 77.4
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 2.7e-247 858.6 559 74.6
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 3.5e-247 858.2 556 75.7
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 4.5e-247 857.8 560 74.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 5.9e-247 857.4 556 74.8
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 5.9e-247 857.4 556 75.4
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 5.9e-247 857.4 576 73.8
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 5.9e-247 857.4 559 74.8
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 7.8e-247 857.1 560 74.5
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 1.0e-246 856.7 557 74.3
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 6.6e-246 854.0 556 74.3
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.9e-245 852.4 559 75.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.9e-245 852.4 556 75.4
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 4.3e-245 851.3 559 74.8
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 7.3e-245 850.5 556 73.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.6e-244 849.4 555 74.6
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.6e-244 849.4 556 74.6
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.8e-244 848.6 559 74.4
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.1e-244 847.4 560 74.3
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 6.1e-244 847.4 556 73.6
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.0e-243 846.7 559 73.7
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.0e-243 846.7 556 73.6
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-243 846.3 559 74.1
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.4e-243 846.3 553 74.5
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 1.8e-243 845.9 557 74.7
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.8e-243 845.9 559 74.4
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 3.0e-243 845.1 557 74.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.0e-243 845.1 557 74.0
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 4.0e-243 844.7 559 73.9
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 9.8e-242 840.1 536 76.7
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 2.2e-241 839.0 556 73.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 8.3e-241 837.0 574 72.1
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.1e-240 836.6 559 73.5
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.4e-240 836.3 559 72.6
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.4e-240 835.5 556 74.6
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.2e-240 835.1 559 73.7
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 4.1e-240 834.7 559 72.5
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.6e-239 832.8 557 72.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 4.6e-239 831.2 549 73.0
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 8.6e-238 827.0 556 72.1
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.6e-236 822.8 559 72.1
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 2.1e-236 822.4 574 70.4
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.1e-235 820.1 559 72.8
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.8e-235 819.3 563 72.1
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 1.2e-234 816.6 559 71.0
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.2e-234 816.6 586 68.6
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 3.4e-234 815.1 560 72.0
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 3.4e-234 815.1 560 71.2
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.9e-233 812.0 524 76.9
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 6.4e-233 810.8 561 70.4
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.1e-232 810.1 559 71.6
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 4.1e-232 808.1 513 77.0
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 9.2e-232 807.0 542 72.1
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 3.5e-231 805.1 560 70.4
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 1.7e-230 802.7 551 71.9
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 5.0e-230 801.2 537 72.4
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 1.1e-229 800.0 556 70.7
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-229 799.7 533 73.5
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 5.6e-229 797.7 556 71.4
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.2e-228 796.6 541 71.5
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.6e-228 796.2 560 69.8
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.1e-228 795.8 556 70.0
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 4.7e-228 794.7 602 68.6
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 8.1e-228 793.9 560 70.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 3.0e-222 775.4 557 68.2
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 3.3e-221 771.9 566 69.6
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 5.6e-221 771.2 542 69.7
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.2e-220 770.0 552 68.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.6e-220 769.6 602 65.0
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.6e-220 769.6 555 68.5
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.1e-220 767.3 565 68.0
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-219 766.9 562 67.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.1e-216 755.0 562 66.9
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 7.1e-216 754.2 490 74.9
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.7e-214 749.6 548 67.2
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.5e-213 745.7 559 68.2
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 2.4e-211 739.2 486 73.0
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.9e-209 731.5 557 65.4
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.0e-206 723.8 545 66.8
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.9e-201 704.9 549 61.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.5e-199 698.7 545 65.0
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.9e-195 684.5 565 61.9
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 9.9e-194 680.6 449 73.3
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.5e-184 649.4 550 56.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 5.7e-181 638.3 545 58.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.0e-174 617.5 391 78.3
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 9.1e-171 604.4 432 69.7
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 2.6e-170 602.8 391 74.7
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 1.7e-169 600.1 322 90.4
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 2.5e-168 596.3 560 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.2e-168 595.9 550 54.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.7e-161 573.5 391 72.1
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 6.5e-161 571.6 486 56.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 5.7e-141 505.4 322 76.7
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.7e-132 476.1 292 77.4
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-128 463.8 308 73.4
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.6e-127 460.7 339 67.0
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 3.1e-126 456.4 323 68.4
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.8e-119 433.3 246 88.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 5.1e-113 412.5 270 74.8
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 9.5e-112 408.3 292 67.8
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.6e-111 407.5 272 73.9
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 9.0e-94 348.6 238 73.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.4e-91 341.3 233 73.8
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 3.3e-80 303.5 240 65.0
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 1.2e-77 295.0 267 54.7
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 8.5e-52 209.1 180 60.0
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-50 205.3 138 72.5
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.1e-50 204.5 137 72.3
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.1e-50 203.0 139 71.9
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 6.7e-49 199.5 139 70.5
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.5e-48 198.4 140 70.0
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.1e-46 190.7 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.9e-35 154.8 98 77.6
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 5.2e-33 146.7 121 62.0
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 9.8e-24 115.9 107 56.1
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.3e-20 105.5 491 26.1
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.9e-19 101.7 57 77.2
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 3.3e-19 100.9 63 74.6
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 4.2e-19 100.5 63 74.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-18 98.6 63 73.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.8e-18 97.8 71 64.8
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.0e-17 94.0 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.2e-17 93.6 63 71.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.7e-15 88.6 73 58.9
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.4e-14 85.5 244 26.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 3.9e-12 77.4 438 23.5
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 8.6e-12 76.3 54 68.5
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 4.7e-10 70.5 517 22.4
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.5e-08 65.5 54 48.1
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-06 58.2 61 41.0
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 2.4e-06 58.2 64 56.2


User provided reference genes

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