Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.0e-45 186.8 128 100.0
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 4.1e-42 174.9 128 96.1
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 2.5e-39 165.6 128 93.0
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 1.4e-37 159.8 124 79.8
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 1.8e-37 159.5 125 92.0
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 3.9e-37 158.3 128 86.7
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 2.5e-36 155.6 124 91.1
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 3.7e-35 151.8 125 86.4
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 1.4e-34 149.8 125 89.6
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.4e-34 149.8 125 86.4
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.4e-34 149.8 125 89.6
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.3e-34 147.9 125 85.6
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 1.1e-28 130.2 127 70.1
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 3.3e-28 128.6 117 60.7
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 2.2e-27 125.9 77 84.4
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 2.8e-27 125.6 77 84.4
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 4.8e-27 124.8 77 83.1
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 5.9e-25 117.9 118 54.2
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 8.5e-24 114.0 110 55.5
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 8.5e-24 114.0 110 55.5
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 3.2e-23 112.1 110 53.6
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 4.2e-23 111.7 110 54.5
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 5.5e-23 111.3 110 53.6
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 5.5e-23 111.3 110 53.6
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 4.7e-22 108.2 111 50.5
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 6.1e-22 107.8 111 50.5
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 6.1e-22 107.8 109 53.2
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 8.0e-22 107.5 110 50.0
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 8.0e-22 107.5 72 70.8
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.0e-21 107.1 112 63.4
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.0e-21 107.1 110 50.9
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 1.4e-21 106.7 112 50.9
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 1.8e-21 106.3 113 52.2
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 3.0e-21 105.5 72 69.4
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 3.0e-21 105.5 72 70.8
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 4.0e-21 105.1 113 50.4
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 4.0e-21 105.1 110 49.1
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 4.0e-21 105.1 74 70.3
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 5.2e-21 104.8 112 49.1
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 5.2e-21 104.8 72 70.8
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 5.2e-21 104.8 72 69.4
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 5.2e-21 104.8 72 69.4
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 5.2e-21 104.8 110 48.2
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 8.8e-21 104.0 71 71.8
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 8.8e-21 104.0 72 69.4
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 1.1e-20 103.6 112 48.2
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 1.1e-20 103.6 111 49.5
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.5e-20 103.2 73 67.1
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 1.5e-20 103.2 74 67.6
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.0e-20 102.8 72 68.1
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.6e-20 102.4 112 72.3
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 2.6e-20 102.4 112 72.3
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 2.6e-20 102.4 72 66.7
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 3.3e-20 102.1 70 70.0
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 3.3e-20 102.1 109 51.4
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 3.3e-20 102.1 108 68.5
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 4.4e-20 101.7 73 67.1
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.4e-20 101.7 110 50.9
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 4.4e-20 101.7 110 50.9
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 4.4e-20 101.7 112 48.2
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 4.4e-20 101.7 72 66.7
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.7e-20 101.3 72 69.4
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 5.7e-20 101.3 72 69.4
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.7e-20 101.3 74 64.9
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 5.7e-20 101.3 107 47.7
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 7.4e-20 100.9 72 68.1
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 9.7e-20 100.5 112 65.2
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.3e-19 100.1 71 66.2
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 1.3e-19 100.1 71 67.6
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 1.3e-19 100.1 71 67.6
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 1.7e-19 99.8 110 46.4
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 2.2e-19 99.4 73 64.4
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 2.2e-19 99.4 111 47.7
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 2.2e-19 99.4 72 68.1
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 2.8e-19 99.0 73 64.4
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 2.8e-19 99.0 71 67.6
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 2.8e-19 99.0 72 66.7
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.8e-19 99.0 71 67.6
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 3.7e-19 98.6 72 65.3
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 3.7e-19 98.6 71 66.2
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 3.7e-19 98.6 71 64.8
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 4.8e-19 98.2 71 66.2
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 6.3e-19 97.8 70 67.1
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 6.3e-19 97.8 71 69.0
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 6.3e-19 97.8 72 63.9
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 6.3e-19 97.8 71 67.6
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.1e-18 97.1 72 65.3
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.1e-18 97.1 72 65.3
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.4e-18 96.7 112 61.6
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 2.4e-18 95.9 72 68.1
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 2.4e-18 95.9 72 62.5
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 3.1e-18 95.5 110 47.3
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 5.3e-18 94.7 74 62.2
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 5.3e-18 94.7 72 63.9
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 7.0e-18 94.4 72 63.9
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 9.1e-18 94.0 67 67.2
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 2.0e-17 92.8 109 66.1
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 2.0e-17 92.8 114 60.5
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 2.6e-17 92.4 110 45.5
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 2.6e-17 92.4 110 45.5
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 2.6e-17 92.4 72 62.5
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 5.9e-17 91.3 72 59.7
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 5.9e-17 91.3 71 59.2
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 5.9e-17 91.3 110 44.5
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 7.7e-17 90.9 72 65.3
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 1.0e-16 90.5 72 62.5
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.7e-16 89.7 104 45.2
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 3.8e-16 88.6 114 41.2
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 6.5e-16 87.8 55 74.5
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 6.5e-16 87.8 55 74.5
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 1.5e-15 86.7 64 64.1
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 4.2e-15 85.1 72 56.9
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 2.7e-14 82.4 74 51.4
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 6.1e-14 81.3 59 64.4
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 2.3e-13 79.3 116 43.1
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 5.2e-13 78.2 71 52.1
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 3.4e-12 75.5 93 63.4
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 3.7e-11 72.0 71 47.9
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 8.3e-11 70.9 73 58.9
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 7.7e-09 64.3 63 50.8
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 3.8e-08 62.0 41 73.2
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 3.8e-08 62.0 75 42.7
CARHR263050 Cardamine hirsuta HOM05D006288 ORTHO05D007416 5.0e-08 61.6 43 72.1
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 1.9e-07 59.7 58 44.8
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 4.2e-07 58.5 75 40.0
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.6e-06 56.6 75 40.0
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 6.1e-06 54.7 75 38.7
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 6.1e-06 54.7 75 38.7


User provided reference genes

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