Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 8.5e-140 500.4 258 100.0
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 9.7e-136 486.9 258 96.5
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.6e-130 469.5 258 92.6
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 6.1e-130 467.6 258 93.0
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 6.1e-130 467.6 258 93.0
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 6.1e-130 467.6 258 93.0
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.0e-129 466.8 258 92.6
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 3.0e-129 465.3 258 92.6
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.5e-128 463.0 258 92.2
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 6.3e-127 457.6 258 90.7
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.8e-126 456.1 260 90.4
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 2.0e-125 452.6 257 89.5
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 2.3e-121 439.1 254 89.4
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 5.7e-120 434.5 254 88.6
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 9.8e-120 433.7 254 89.0
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.5e-117 425.2 257 84.0
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 7.3e-107 391.0 263 74.9
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 4.6e-93 345.1 245 76.3
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.3e-83 312.4 238 65.1
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.5e-80 303.5 238 63.9
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.7e-79 300.1 256 60.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.2e-79 299.7 241 61.8
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 3.8e-79 298.9 235 64.3
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 4.9e-79 298.5 265 58.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.4e-78 296.2 243 60.9
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 4.2e-78 295.4 263 59.3
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 5.4e-78 295.0 229 63.3
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.6e-77 293.5 238 63.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 1.6e-77 293.5 266 57.5
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.5e-77 292.4 238 61.3
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.5e-77 292.4 238 61.3
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 6.0e-77 291.6 238 62.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 7.8e-77 291.2 246 62.2
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 7.8e-77 291.2 238 63.9
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.8e-77 291.2 265 57.4
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 7.8e-77 291.2 247 61.5
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.0e-76 290.8 254 63.0
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.0e-76 290.8 234 63.2
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.7e-76 290.0 233 61.8
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.9e-76 288.9 264 57.2
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.9e-76 288.9 234 62.4
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 8.7e-76 287.7 264 55.3
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 5.6e-75 285.0 254 61.8
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.6e-74 283.5 240 61.2
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 2.1e-74 283.1 249 59.8
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.2e-74 281.6 240 60.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 1.1e-73 280.8 240 60.4
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.1e-73 280.8 264 54.2
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.8e-73 280.0 249 59.8
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.4e-73 279.6 234 61.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.1e-73 279.3 253 58.5
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 3.1e-73 279.3 253 58.5
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.1e-73 279.3 228 60.1
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 4.0e-73 278.9 247 58.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 4.0e-73 278.9 240 59.2
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 9.0e-73 277.7 236 61.4
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.5e-72 276.9 239 58.2
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.0e-72 276.6 234 62.4
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.6e-72 276.2 237 59.1
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.6e-72 276.2 252 56.0
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 4.4e-72 275.4 233 59.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 4.4e-72 275.4 233 59.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 4.4e-72 275.4 248 60.9
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 5.8e-72 275.0 233 59.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 7.6e-72 274.6 253 58.9
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 7.6e-72 274.6 248 60.1
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 9.9e-72 274.2 258 54.7
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.3e-71 273.9 240 58.3
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.2e-71 273.1 241 57.3
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.9e-71 271.9 238 60.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 6.4e-71 271.6 255 54.9
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.1e-70 270.8 244 57.0
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.9e-70 270.0 224 62.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.4e-70 269.6 235 61.3
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 3.2e-70 269.2 240 60.0
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 4.2e-70 268.9 242 57.0
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 9.3e-70 267.7 256 55.9
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.9e-68 262.3 246 57.7
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.1e-67 260.8 249 56.6
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.1e-67 260.8 215 60.0
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.9e-67 260.0 251 55.4
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.1e-65 254.2 240 57.5
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.1e-65 252.7 259 53.7
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 9.0e-65 251.1 230 57.4
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 9.0e-65 251.1 228 56.1
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 9.0e-65 251.1 259 53.3
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.5e-64 250.4 236 53.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 2.0e-64 250.0 232 58.2
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.0e-64 250.0 251 52.6
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.5e-64 248.8 208 61.5
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.3e-63 247.3 226 56.6
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.3e-63 247.3 235 53.2
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 2.2e-63 246.5 224 55.4
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.2e-63 246.5 244 52.9
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.9e-63 246.1 260 53.5
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.4e-63 245.0 237 52.7
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 6.4e-63 245.0 240 55.4
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 8.4e-63 244.6 259 52.1
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-62 243.0 261 51.7
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.5e-62 241.9 269 49.4
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 3.5e-61 239.2 231 52.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 4.6e-61 238.8 234 53.0
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 6.0e-61 238.4 257 52.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.7e-60 234.6 261 50.6
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.3e-59 232.6 245 54.3
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 5.6e-59 231.9 238 51.3
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.0e-57 224.6 216 58.3
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 9.0e-57 224.6 241 51.9
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.0e-56 223.4 262 49.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.6e-56 223.0 230 57.0
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.2e-55 219.9 190 57.9
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 9.3e-54 214.5 238 49.2
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.0e-52 211.1 247 49.8
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.1e-51 207.6 256 46.9
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.5e-51 207.2 181 58.6
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.7e-51 205.3 195 57.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 9.6e-51 204.5 233 49.8
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.2e-47 193.4 223 48.4
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.0e-44 184.5 142 58.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.5e-43 179.9 239 42.7
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 8.5e-39 164.9 238 39.1
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.5e-32 144.1 122 54.1
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 3.4e-32 142.9 94 81.9
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 3.4e-32 142.9 94 81.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.3e-31 141.0 209 39.2
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 4.7e-29 132.5 217 37.8
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.1e-29 132.1 145 47.6
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.9e-29 131.7 186 42.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 6.7e-28 128.6 133 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 4.4e-27 125.9 230 35.2
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 5.7e-27 125.6 231 36.4
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.7e-26 122.9 182 43.4
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.7e-26 122.9 225 35.1
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.1e-25 121.3 227 32.6
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-25 120.2 182 42.9
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.4e-25 120.2 159 40.9
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.2e-24 117.9 224 34.8
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.0e-23 112.5 154 44.8
BcaC06g30702 Brassica carinata HOM05D005143 ORTHO05D006404 5.0e-15 85.9 55 80.0
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.5e-14 84.3 75 57.3
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-12 77.8 70 62.9
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 1.5e-06 57.8 49 61.2
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.5e-06 57.8 91 36.3
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 4.2e-06 56.2 49 63.3


User provided reference genes

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