Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 6.1e-98 360.9 196 100.0
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.1e-90 335.9 196 94.9
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.2e-82 310.1 196 87.2
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.2e-80 303.5 205 80.5
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.3e-79 300.1 208 79.3
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.1e-70 268.5 196 76.5
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 9.2e-70 267.3 211 72.0
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 4.6e-69 265.0 198 75.3
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 4.6e-69 265.0 198 75.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-68 263.5 197 75.6
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 5.0e-68 261.5 197 76.1
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.6e-68 261.2 197 75.6
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.6e-68 261.2 197 75.6
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.2e-62 242.3 208 68.8
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 5.4e-62 241.5 198 71.2
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 8.6e-60 234.2 227 63.0
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.9e-59 233.0 198 69.2
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.7e-58 228.4 199 67.8
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 9.6e-51 204.1 199 63.3
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-48 197.2 196 63.3
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.0e-48 196.4 175 62.3
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.9e-47 192.6 166 62.7
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 6.4e-47 191.4 173 60.1
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 9.3e-46 187.6 163 62.0
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 7.8e-45 184.5 141 74.5
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.5e-43 180.3 175 60.0
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.3e-43 178.7 174 55.7
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 7.3e-43 177.9 168 58.3
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 7.3e-43 177.9 175 55.4
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.8e-42 176.0 175 55.4
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.6e-42 175.6 167 59.3
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.2e-40 170.6 199 51.3
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.0e-40 169.9 173 54.9
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.6e-40 169.5 166 57.2
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.6e-40 169.5 189 52.4
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.6e-40 167.9 168 54.8
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 9.9e-40 167.5 192 51.6
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.7e-39 166.8 174 52.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 6.4e-39 164.9 175 55.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 8.4e-39 164.5 175 54.3
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.9e-38 163.3 170 52.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.4e-38 162.9 170 52.4
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.2e-38 162.5 167 53.9
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 4.2e-38 162.2 167 53.9
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 4.2e-38 162.2 201 47.8
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 9.3e-38 161.0 173 53.8
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.3e-38 161.0 169 57.4
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.3e-38 161.0 171 56.1
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 9.3e-38 161.0 167 55.1
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.2e-37 160.6 175 56.6
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.6e-37 160.2 172 52.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 4.6e-37 158.7 179 53.6
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-36 157.1 171 55.6
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.9e-36 155.6 177 53.7
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.7e-36 154.8 178 52.2
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 6.7e-36 154.8 173 52.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 8.7e-36 154.5 195 48.7
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.6e-34 150.2 177 49.7
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 2.1e-34 149.8 158 52.5
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.8e-33 146.7 183 48.1
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.4e-33 146.4 156 51.9
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.1e-33 146.0 154 53.9
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 4.0e-33 145.6 163 52.1
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 4.0e-33 145.6 193 47.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 9.0e-33 144.4 154 53.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.2e-32 144.1 171 49.1
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 3.4e-32 142.5 155 53.5
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 5.8e-32 141.7 169 49.7
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 9.9e-32 141.0 187 48.7
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 1.7e-31 140.2 169 49.1
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.2e-31 139.8 149 55.7
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 3.8e-31 139.0 160 50.0
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 6.4e-31 138.3 186 45.2
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 8.4e-31 137.9 160 49.4
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.4e-30 137.1 175 46.9
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.9e-30 136.7 175 45.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.9e-30 136.7 175 45.7
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 4.2e-30 135.6 181 48.1
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 5.5e-30 135.2 161 51.6
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 6.0e-29 131.7 160 48.8
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 7.9e-29 131.3 166 47.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.3e-28 130.6 175 45.1
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 2.3e-28 129.8 214 40.2
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.5e-27 127.1 169 46.2
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.5e-27 126.3 158 49.4
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.3e-26 124.0 173 43.4
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.6e-26 123.6 155 47.1
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 8.2e-26 121.3 195 44.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.4e-25 120.6 168 44.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.4e-25 120.6 183 44.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 2.4e-25 119.8 185 42.7
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 9.0e-25 117.9 161 43.5
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.2e-24 117.5 174 44.3
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.5e-24 117.1 72 77.8
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.4e-24 115.9 106 57.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.4e-24 115.9 175 42.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 5.8e-24 115.2 164 45.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.3e-23 114.0 198 40.9
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 8.4e-23 111.3 151 47.0
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.4e-23 111.3 180 38.3
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 1.1e-22 110.9 234 35.9
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.5e-22 109.8 173 39.3
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 3.2e-22 109.4 154 42.9
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.2e-22 109.4 154 42.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.2e-22 109.0 194 43.3
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.7e-21 106.3 201 40.3
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 3.5e-21 105.9 167 41.9
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 7.9e-21 104.8 175 40.6
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.0e-20 104.4 178 42.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.3e-20 103.2 156 42.3
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.5e-19 99.8 202 37.6
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 9.7e-19 97.8 109 55.0
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.3e-18 97.4 177 39.5
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.8e-18 96.3 172 39.5
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 6.3e-18 95.1 103 53.4
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.1e-17 94.4 86 62.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.4e-17 93.2 198 36.9
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 3.1e-17 92.8 172 38.4
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.5e-16 90.5 183 36.6
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 2.0e-16 90.1 194 35.1
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 1.3e-15 87.4 123 45.5
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 2.2e-15 86.7 51 86.3
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 5.0e-15 85.5 143 37.1
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 5.5e-14 82.0 191 34.0
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 7.2e-14 81.6 159 42.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.2e-14 81.6 159 42.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.6e-13 80.5 119 41.2
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.6e-13 80.5 165 35.2
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 2.1e-13 80.1 202 34.7
CARHR150300 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.7e-13 79.7 70 60.0
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.0e-12 77.8 167 33.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.4e-12 77.4 103 48.5
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 6.7e-12 75.1 106 43.4
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 2.5e-11 73.2 48 79.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-09 67.0 103 43.7
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 2.4e-09 66.6 191 29.8
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 3.1e-09 66.2 72 54.2
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 3.1e-09 66.2 72 54.2
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.5e-08 63.9 125 39.2
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.0e-08 63.5 57 63.2
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 2.6e-08 63.2 98 43.9
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.0e-07 61.2 76 53.9
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 6.5e-07 58.5 63 57.1
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.5e-07 58.2 158 37.3
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.1e-06 57.8 69 47.8
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.4e-06 57.4 121 38.0
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-06 57.4 165 30.3
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.4e-06 57.4 165 30.3
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.5e-06 56.6 156 30.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 4.2e-06 55.8 103 40.8
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 7.2e-06 55.1 77 48.1
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.4e-06 54.7 137 36.5


User provided reference genes

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