Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 9.2e-104 380.2 186 100.0
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 5.1e-94 347.8 186 91.9
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 4.3e-69 265.0 180 78.9
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.9e-65 252.3 198 73.2
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.2e-64 247.7 198 73.2
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.9e-57 225.7 198 66.2
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.0e-54 215.7 178 71.3
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.0e-54 215.7 178 71.3
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.0e-54 215.7 178 71.3
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 6.7e-54 214.5 178 70.2
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 2.0e-53 213.0 178 70.2
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 3.7e-52 208.8 200 63.5
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 1.5e-50 203.4 224 60.3
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.0e-49 200.7 220 58.2
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.0e-49 200.7 220 58.2
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 5.5e-48 194.9 223 56.5
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 8.0e-47 191.0 179 64.2
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.9e-46 188.7 207 56.0
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 2.0e-45 186.4 212 57.1
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 7.4e-45 184.5 210 55.7
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 3.1e-43 179.1 205 55.6
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 9.1e-43 177.6 208 56.7
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 7.7e-42 174.5 213 53.1
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 5.0e-41 171.8 207 55.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 2.5e-40 169.5 207 55.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 3.2e-40 169.1 205 52.7
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 5.5e-40 168.3 215 52.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 5.5e-40 168.3 206 55.3
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 5.5e-40 168.3 208 51.0
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 5.5e-40 168.3 211 56.4
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.6e-39 166.8 207 55.1
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.0e-38 164.1 205 52.7
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.4e-38 163.7 207 53.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.3e-38 162.9 210 55.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 1.2e-37 160.6 207 56.5
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.2e-37 160.6 199 49.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.2e-37 160.6 208 49.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.6e-37 159.5 204 51.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 4.4e-37 158.7 208 55.8
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.4e-37 158.7 206 52.4
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 5.7e-37 158.3 215 51.6
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 7.5e-37 157.9 210 54.3
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 7.5e-37 157.9 205 51.7
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 7.5e-37 157.9 205 51.7
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 9.7e-37 157.5 197 50.3
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 9.7e-37 157.5 203 50.2
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.7e-36 156.8 207 53.6
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 2.2e-36 156.4 207 53.6
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.8e-36 155.2 199 50.3
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 6.3e-36 154.8 207 52.7
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.4e-35 153.7 210 51.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.8e-35 153.3 205 52.7
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 4.1e-35 152.1 206 50.5
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.1e-35 152.1 197 50.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 4.1e-35 152.1 197 50.8
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.1e-35 152.1 208 48.1
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 5.3e-35 151.8 200 51.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 7.0e-35 151.4 215 50.7
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 9.1e-35 151.0 207 48.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.6e-34 150.2 205 51.7
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.7e-34 149.4 213 52.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.7e-34 149.4 209 50.7
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.5e-34 149.1 208 49.0
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.5e-34 149.1 197 49.7
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 5.9e-34 148.3 205 50.2
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-34 148.3 205 50.2
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.9e-34 148.3 205 50.2
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 5.9e-34 148.3 205 50.2
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 5.0e-33 145.2 205 49.3
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 6.5e-33 144.8 205 47.8
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 8.5e-33 144.4 206 50.5
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 8.5e-33 144.4 208 46.6
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 8.5e-33 144.4 203 52.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.1e-32 144.1 205 49.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 2.5e-32 142.9 214 50.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 2.5e-32 142.9 214 50.0
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 3.2e-32 142.5 205 48.8
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 7.2e-32 141.4 195 51.8
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 9.4e-32 141.0 215 48.4
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 9.4e-32 141.0 215 48.4
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 9.4e-32 141.0 207 50.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-31 140.6 208 49.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.6e-31 140.2 200 49.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.6e-31 140.2 210 49.5
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.7e-31 139.4 205 48.3
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.4e-30 137.1 211 46.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.4e-30 137.1 196 50.0
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 5.2e-30 135.2 205 46.8
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.5e-29 133.7 200 47.0
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 2.0e-29 133.3 207 45.9
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.4e-29 132.5 197 47.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.4e-29 132.1 211 46.0
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 9.8e-29 131.0 205 45.9
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.3e-28 130.6 207 44.9
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.7e-28 130.2 195 46.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.7e-28 129.0 205 45.4
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.3e-28 128.3 208 44.7
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 6.3e-28 128.3 195 47.2
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 8.3e-28 127.9 194 46.9
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.1e-27 127.5 209 44.5
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.1e-27 127.5 188 51.6
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.1e-27 125.9 220 46.8
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 9.1e-27 124.4 205 46.3
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 9.1e-27 124.4 214 43.0
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.2e-26 124.0 211 44.5
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 2.0e-26 123.2 208 44.2
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 7.7e-26 121.3 207 45.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.7e-25 120.2 204 46.6
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.1e-24 117.5 207 44.4
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 2.5e-24 116.3 150 54.0
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 9.5e-24 114.4 193 42.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.8e-23 112.8 209 41.1
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 2.8e-23 112.8 221 41.6
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 2.8e-23 112.8 203 41.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 6.1e-23 111.7 207 41.5
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 6.1e-23 111.7 209 40.2
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 6.1e-23 111.7 211 39.8
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.0e-22 110.9 218 44.5
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.0e-22 110.9 200 40.5
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 4.0e-22 109.0 200 40.0
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 4.0e-22 109.0 220 40.5
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 8.9e-22 107.8 209 40.7
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 3.4e-21 105.9 209 45.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.3e-20 104.0 205 37.1
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.7e-20 102.4 201 40.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 6.3e-20 101.7 187 39.6
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 6.3e-20 101.7 78 74.4
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 6.3e-20 101.7 198 39.9
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 8.3e-20 101.3 196 41.3
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 2.0e-18 96.7 211 37.4
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-18 95.5 204 41.2
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.0e-17 94.4 204 41.2
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.5e-16 90.5 196 34.2
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 5.6e-16 88.6 179 36.9
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.3e-14 83.2 94 55.3
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 9.8e-13 77.8 67 64.2
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.3e-12 77.4 203 35.5
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.0e-10 70.1 204 32.4
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 3.9e-09 65.9 160 40.6
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 5.0e-09 65.5 147 36.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 8.6e-09 64.7 199 31.7
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 8.6e-09 64.7 81 54.3
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 1.9e-08 63.5 94 45.7
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.5e-08 63.2 117 37.6
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 4.7e-07 58.9 183 33.3


User provided reference genes

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