Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 2166.7 1088 100.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 2013.8 1088 92.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1790.8 1050 86.2
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1785.4 1105 81.2
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1781.1 1105 81.2
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1776.5 1117 80.3
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1775.8 1098 81.9
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1771.5 1118 80.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1701.0 970 86.3
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1697.2 1070 79.3
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 0.0e+00 1590.9 907 87.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1557.3 1095 72.2
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 0.0e+00 1537.7 886 86.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1267.7 1084 58.5
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1258.4 1038 61.2
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1229.2 1078 58.3
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1222.2 1064 58.7
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1213.4 1041 57.1
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1211.4 1024 59.4
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1210.3 1045 58.2
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1202.2 1041 56.5
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1198.7 1100 56.0
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1182.9 1064 57.1
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1176.8 1075 56.3
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1171.0 1110 54.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1164.1 1028 55.9
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1163.7 1052 56.0
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1151.0 1079 54.4
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1151.0 1080 54.1
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1146.3 1060 55.1
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1146.3 1060 55.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1143.3 1068 54.6
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1135.9 1042 55.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1133.6 1062 53.6
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1133.2 1041 54.6
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 1048 54.9
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1120.5 1063 54.0
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1118.2 1046 53.4
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1113.2 1095 53.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1109.0 1065 53.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1104.7 1037 54.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1104.0 1056 53.7
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 1048 53.7
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1100.5 1081 52.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1096.6 1051 52.4
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1091.3 1037 52.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1090.5 1101 53.2
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1088.6 1075 53.2
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1083.2 1065 50.7
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 5.3e-308 1061.2 1114 49.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.9e-305 1052.7 1058 52.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 6.7e-303 1044.3 1113 49.4
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 8.7e-303 1043.9 1052 51.9
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.1e-302 1043.5 1005 52.3
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-301 1039.3 1075 51.3
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 3.1e-300 1035.4 1038 52.2
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.6e-299 1030.8 960 54.7
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 7.9e-296 1020.8 1087 49.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 6.7e-295 1017.7 1007 51.0
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.1e-293 1012.7 993 53.0
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 3.7e-293 1011.9 909 56.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.3e-290 1003.4 1006 51.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 3.6e-288 995.3 1050 49.9
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 4.6e-288 995.0 940 53.2
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.1e-286 990.3 1030 49.5
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 9.7e-286 987.3 1080 47.9
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 2.8e-285 985.7 1078 48.6
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 6.3e-285 984.6 1021 49.5
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.1e-284 983.8 1083 49.7
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 5.9e-283 978.0 989 49.7
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 7.7e-283 977.6 972 50.0
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 1.4e-281 973.4 1022 48.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 4.8e-277 958.4 1034 48.6
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 1.5e-275 953.4 875 55.4
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.4e-268 930.2 1020 47.5
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.7e-262 908.3 769 57.1
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.2e-261 906.4 1075 45.4
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.2e-259 900.6 1073 45.2
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.6e-254 882.9 770 57.5
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.3e-253 880.6 884 52.4
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.3e-253 878.2 867 52.4
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 5.2e-247 858.6 1017 45.6
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 3.8e-242 842.4 1088 42.0
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 8.6e-242 841.3 1047 44.3
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 4.0e-231 805.8 761 54.4
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 4.0e-223 779.2 999 42.5
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 8.6e-218 761.5 692 55.5
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.6e-216 757.3 934 44.5
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.6e-216 757.3 672 57.6
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 4.7e-208 729.2 978 40.8
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-199 700.7 669 53.2
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.2e-196 689.5 1060 39.2
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.0e-194 683.3 723 50.5
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.5e-190 671.0 549 60.3
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 6.7e-186 655.6 600 54.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.8e-168 597.0 634 47.8
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 8.8e-162 575.5 488 57.8
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.0e-149 535.4 611 47.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 7.0e-119 433.0 363 59.0
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.9e-109 400.6 343 58.9
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-89 335.5 382 46.6
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.4e-89 334.3 347 48.1
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.0e-82 309.7 1014 26.7
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.5e-76 291.6 218 62.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.1e-68 266.2 226 59.7
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.6e-67 262.3 217 59.4
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.5e-63 248.4 293 43.3
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 8.2e-59 233.4 167 65.3
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.4e-50 206.1 208 52.9
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-50 205.3 358 35.8
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 3.4e-49 201.4 265 42.3
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.2e-48 198.7 140 73.6
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.1e-47 196.4 174 56.3
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.4e-47 196.1 902 23.7
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.2e-43 182.2 179 54.7
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-40 173.3 179 52.5
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-39 169.5 179 52.0
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 3.9e-37 161.4 125 60.0
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.4e-36 157.9 1123 21.8
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 6.3e-35 154.1 208 36.1
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 8.2e-35 153.7 573 25.7
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 7.0e-34 150.6 716 23.2
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 5.9e-33 147.5 115 56.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.8e-32 144.8 137 51.1
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 5.5e-31 141.0 97 70.1
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.7e-30 138.7 134 53.0
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 2.7e-30 138.7 128 50.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 6.1e-30 137.5 154 44.8
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.2e-27 129.0 101 66.3
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 5.9e-25 120.9 141 45.4
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.6e-22 111.7 142 43.7
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.7e-22 111.3 83 60.2
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 5.2e-21 107.8 83 57.8
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.8e-21 107.1 66 78.8
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 1.2e-20 106.7 59 83.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 3.4e-20 105.1 59 81.4
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-19 102.8 77 62.3
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.0e-17 95.9 78 69.2
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.5e-17 94.7 54 83.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-16 92.8 348 26.1
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 5.0e-16 91.3 84 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.1e-14 84.3 915 20.9
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.4e-12 78.2 226 26.1
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.3e-11 76.6 384 23.4
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.3e-11 74.3 371 24.5
CARHR286010 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.3e-11 73.9 74 56.8
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 1.2e-09 70.1 34 82.4
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 4.5e-09 68.2 30 90.0
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.7e-08 66.2 110 41.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.9e-08 65.5 65 49.2
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 2.5e-07 62.4 54 50.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 7.3e-07 60.8 46 58.7


User provided reference genes

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