Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.1e-291 1005.0 512 100.0
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 1.9e-255 885.6 516 88.0
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 3.5e-254 881.3 516 89.5
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.3e-243 846.3 517 84.7
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.1e-235 818.9 516 82.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.2e-223 778.5 519 80.9
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-221 773.1 520 79.6
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.3e-219 766.5 511 79.8
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 3.7e-219 765.0 520 79.4
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 3.7e-219 765.0 520 79.4
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 4.8e-219 764.6 510 79.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 4.8e-219 764.6 510 79.0
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-218 763.1 520 79.2
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 7.7e-217 757.3 529 77.3
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 6.5e-216 754.2 512 78.9
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 9.4e-215 750.4 525 78.3
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.7e-214 748.8 515 78.4
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 2.9e-208 728.8 537 74.1
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 1.9e-191 672.9 521 69.7
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.2e-130 469.5 521 51.8
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.3e-128 464.2 488 53.1
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.9e-127 460.3 484 52.1
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 7.4e-127 458.4 527 50.5
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.1e-126 456.8 513 50.9
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 3.1e-125 453.0 517 49.3
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 6.9e-125 451.8 518 49.4
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 9.0e-125 451.4 526 48.7
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 2.0e-124 450.3 513 49.3
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.6e-124 449.9 490 50.6
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 3.8e-123 446.0 484 51.7
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 1.1e-122 444.5 519 49.1
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 6.0e-121 438.7 483 51.1
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.0e-121 438.7 490 50.6
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.9e-121 438.3 505 49.7
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 7.9e-121 438.3 513 49.3
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.0e-120 438.0 451 52.3
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 1.8e-120 437.2 514 48.2
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 6.7e-120 435.3 450 53.3
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 8.7e-120 434.9 483 50.1
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 9.6e-119 431.4 517 48.7
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 4.8e-118 429.1 484 50.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 8.1e-118 428.3 548 47.4
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.1e-117 427.9 519 47.4
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.8e-117 427.2 520 46.2
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 3.8e-115 419.5 446 52.5
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 8.4e-115 418.3 501 48.1
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 3.2e-114 416.4 482 48.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 7.1e-114 415.2 514 46.5
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 7.1e-114 415.2 482 46.9
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 9.3e-114 414.8 558 45.0
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 6.0e-113 412.1 448 50.7
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 3.9e-112 409.5 593 43.5
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.9e-111 407.1 511 45.8
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.5e-111 406.8 497 47.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.6e-110 404.1 516 47.3
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.6e-110 404.1 450 50.2
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 2.8e-110 403.3 486 46.9
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 4.1e-109 399.4 523 46.3
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 4.1e-109 399.4 501 45.9
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 6.9e-109 398.7 483 48.9
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.0e-108 397.1 482 47.1
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 4.5e-108 396.0 449 50.1
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 7.6e-108 395.2 451 49.7
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 7.6e-108 395.2 525 46.5
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 1.1e-106 391.3 476 46.4
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.4e-106 391.0 488 45.3
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.3e-106 388.3 457 48.1
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.6e-105 387.5 442 48.2
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 2.7e-105 386.7 516 44.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 2.7e-105 386.7 445 47.9
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 6.1e-105 385.6 497 45.3
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.0e-104 384.8 456 47.8
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 1.3e-104 384.4 472 45.8
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.8e-104 384.0 455 47.9
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.1e-103 381.3 483 44.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.1e-103 381.3 559 42.6
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.9e-103 380.6 510 45.5
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.6e-102 377.5 501 43.1
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.8e-101 374.0 389 51.4
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 6.9e-101 372.1 439 45.8
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.2e-100 371.3 431 48.0
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 2.6e-100 370.2 525 42.5
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.9e-99 366.7 458 44.8
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 8.5e-99 365.2 355 54.1
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 4.2e-98 362.8 523 41.5
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 3.6e-97 359.8 510 42.5
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 3.0e-96 356.7 537 42.1
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 6.7e-96 355.5 523 41.1
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.7e-94 350.9 524 42.7
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 5.3e-93 345.9 523 42.4
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 8.5e-91 338.6 373 48.3
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.9e-90 337.4 458 44.8
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 9.1e-85 318.5 378 45.5
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 5.9e-84 315.8 454 42.3
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 8.5e-83 312.0 431 42.5
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 2.5e-82 310.5 457 40.7
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.2e-78 297.4 462 38.3
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.0e-75 288.5 309 52.1
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 6.8e-72 275.8 207 69.1
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.7e-70 270.0 377 42.7
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 5.4e-69 266.2 497 35.0
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 4.3e-58 229.9 450 36.0
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 7.5e-55 219.2 191 62.3
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.5e-50 204.1 316 42.1
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.1e-49 201.1 287 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 2.2e-46 191.0 464 33.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 2.2e-46 191.0 453 30.2
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 3.2e-45 187.2 290 36.9
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 6.0e-44 183.0 469 30.5
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 2.3e-43 181.0 144 66.0
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 3.9e-43 180.3 441 31.1
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.2e-41 172.9 309 36.6
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.9e-38 164.1 215 44.2
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 4.3e-34 150.2 143 53.1
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.1e-33 146.0 227 39.2
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.4e-31 140.6 127 61.4
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 7.8e-28 129.4 120 57.5
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.0e-27 129.0 304 32.2
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 2.8e-25 120.9 246 32.1
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 3.6e-25 120.6 143 57.3
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.0e-16 90.5 127 38.6
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 2.9e-14 84.3 142 35.9
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.1e-13 82.4 199 29.6
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 2.0e-07 61.6 85 47.1
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 9.9e-07 59.3 67 43.3
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 9.9e-07 59.3 182 28.6


User provided reference genes

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