Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G48610 Arabidopsis thaliana HOM05D003029 ORTHO05D003413 4.3e-150 535.0 355 100.0
AL43U10010 Arabidopsis lyrata HOM05D000011 ORTHO05D000018 2.7e-112 409.5 344 86.3
Carub.0008s0826 Capsella rubella HOM05D003029 ORTHO05D003413 1.0e-95 354.4 321 83.2
CARHR291990 Cardamine hirsuta HOM05D003029 ORTHO05D003413 1.8e-71 273.9 334 66.2
BcaC06g30775 Brassica carinata HOM05D003029 ORTHO05D003413 3.5e-67 259.6 325 61.8
Thhalv10004154m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 2.6e-62 243.4 327 63.0
AL625U10010 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 1.3e-58 231.1 172 78.5
C07p39290 Brassica napus HOM05D003029 ORTHO05D003413 6.4e-53 212.2 324 55.9
BolC7t44449H Brassica oleracea HOM05D003029 ORTHO05D003413 6.4e-53 212.2 324 55.9
A06p39050 Brassica napus HOM05D003029 ORTHO05D003413 1.9e-52 210.7 350 53.7
AL3G18580 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 3.9e-50 203.0 325 55.7
THA.LOC104822483 Tarenaya hassleriana HOM05D003029 ORTHO05D003413 1.2e-48 198.0 310 58.1
Thhalv10020618m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 8.1e-48 195.3 329 53.2
Aa31LG5G17850 Aethionema arabicum HOM05D003029 ORTHO05D003413 6.8e-47 192.2 327 52.3
Sp3g06210 Schrenkiella parvula HOM05D003029 ORTHO05D003413 2.6e-46 190.3 331 50.2
Sp3g06230 Schrenkiella parvula HOM05D003029 ORTHO05D003413 5.8e-46 189.1 329 50.8
CARHR081930 Cardamine hirsuta HOM05D003029 ORTHO05D003413 9.8e-46 188.3 326 51.5
Carub.0003s0681 Capsella rubella HOM05D003029 ORTHO05D003413 9.2e-44 181.8 328 48.5
Sp2g18960 Schrenkiella parvula HOM05D003029 ORTHO05D003413 1.2e-40 171.4 178 56.2
C03p42770 Brassica napus HOM05D003029 ORTHO05D003413 4.7e-40 169.5 324 52.2
BolC3t16546H Brassica oleracea HOM05D003029 ORTHO05D003413 1.8e-39 167.5 324 53.7
BraA03t12696Z Brassica rapa HOM05D003029 ORTHO05D003413 9.2e-36 155.2 327 48.0
A03p35170 Brassica napus HOM05D003029 ORTHO05D003413 1.7e-34 151.0 327 47.4
BraA01t04389Z Brassica rapa HOM05D003029 ORTHO05D003413 5.2e-31 139.4 324 45.1
BcaB04g21298 Brassica carinata HOM05D003029 ORTHO05D003413 6.4e-29 132.5 323 44.9
BolC1t05561H Brassica oleracea HOM05D003029 ORTHO05D003413 1.4e-28 131.3 327 42.8
TWI36G1114 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 6.2e-16 89.4 335 37.6
A05p40910 Brassica napus HOM05D003029 ORTHO05D003413 1.1e-15 88.6 325 33.5
BraA05t22820Z Brassica rapa HOM05D003029 ORTHO05D003413 1.1e-15 88.6 325 33.5
C05p60010 Brassica napus HOM05D003029 ORTHO05D003413 1.2e-14 85.1 337 32.3
BcaC05g29857 Brassica carinata HOM05D003029 ORTHO05D003413 9.9e-14 82.0 326 40.8
TAR362G1056 Trochodendron aralioides HOM05D003029 ORTHO05D003413 4.9e-13 79.7 329 47.1
TWI75G0963 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 6.4e-13 79.3 326 36.2
TAR633G2732 Trochodendron aralioides HOM05D003029 ORTHO05D003413 8.4e-13 79.0 329 46.2
Atru.chr6.1447 Acer truncatum HOM05D003029 ORTHO05D003413 5.5e-12 76.3 332 41.6
TWI36G0576 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 5.5e-12 76.3 327 34.3
Prupe.8G196300 Prunus persica HOM05D003029 ORTHO05D003413 7.1e-12 75.9 235 43.0
Dinv14526 Davidia involucrata HOM05D003029 ORTHO05D003413 1.6e-11 74.7 330 43.9
BNapus_Darmor_BZH_scaffold_109p00150 Brassica napus HOM05D003029 ORTHO05D003413 1.0e-10 72.0 159 37.7
Actinidia11454 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.8e-10 71.2 370 42.7
BcaC05g29734 Brassica carinata HOM05D003029 ORTHO05D003413 3.0e-10 70.5 221 31.2
CiPaw.14G040000 Carya illinoinensis HOM05D003029 ORTHO05D003413 3.0e-10 70.5 325 43.1
Actinidia28994 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.1e-09 68.6 364 42.6
TWI18G0251 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 4.3e-09 66.6 329 35.6
TAR636G0249 Trochodendron aralioides HOM05D003029 ORTHO05D003413 5.6e-09 66.2 234 45.3
Nn3g20075 Nelumbo nucifera HOM05D003029 ORTHO05D003413 1.3e-08 65.1 167 50.9
Aqoxy2G03937 Aquilegia oxysepala HOM05D003029 ORTHO05D003413 1.6e-08 64.7 33 84.8
Nn3g20072 Nelumbo nucifera HOM05D003029 ORTHO05D003413 8.1e-08 62.4 167 50.9
Duzib268G0331 Durio zibethinus HOM05D003029 ORTHO05D003413 4.0e-07 60.1 33 78.8
GSVIVG01021020001 Vitis vinifera HOM05D003029 ORTHO05D003413 4.0e-07 60.1 33 78.8
Lalb_Chr07g0186821 Lupinus albus HOM05D003029 ORTHO05D003413 1.5e-06 58.2 33 75.8
Lalb_Chr13g0294851 Lupinus albus HOM05D003029 ORTHO05D003413 1.5e-06 58.2 32 78.1
FvH4_4g13340 Fragaria vesca HOM05D003029 ORTHO05D003413 2.0e-06 57.8 33 75.8
FAN12G1114 Fragaria x ananassa HOM05D003029 ORTHO05D003413 2.0e-06 57.8 33 75.8
RcHm_v2.0_Chr4g0413691 Rosa chinensis HOM05D003029 ORTHO05D003413 2.0e-06 57.8 33 75.8
Thecc.04G195700 Theobroma cacao HOM05D003029 ORTHO05D003413 2.0e-06 57.8 33 75.8
Manes.13G051200 Manihot esculenta HOM05D003029 ORTHO05D003413 2.6e-06 57.4 247 36.0
Atru.chr4.1590 Acer truncatum HOM05D003029 ORTHO05D003413 3.4e-06 57.0 32 78.1
Duzib151G1197 Durio zibethinus HOM05D003029 ORTHO05D003413 4.5e-06 56.6 33 75.8
Gohir.A02G019500 Gossypium hirsutum HOM05D003029 ORTHO05D003413 4.5e-06 56.6 32 78.1
Gohir.D02G022800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 4.5e-06 56.6 32 78.1
Gorai.005G028200 Gossypium raimondii HOM05D003029 ORTHO05D003413 4.5e-06 56.6 32 78.1
MD13G1282000 Malus domestica HOM05D003029 ORTHO05D003413 4.5e-06 56.6 33 72.7
ATR0561G140 Amborella trichopoda HOM05D003029 ORTHO05D003413 5.8e-06 56.2 33 72.7
Potri.001G319500 Populus trichocarpa HOM05D003029 ORTHO05D003413 5.8e-06 56.2 33 75.8
Prupe.1G164200 Prunus persica HOM05D003029 ORTHO05D003413 5.8e-06 56.2 33 72.7
HPP92_006969 Vanilla planifolia HOM05D003029 ORTHO05D003413 5.8e-06 56.2 33 72.7
ClCG06G007970 Citrullus lanatus HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 75.8
MELO3C020427.2 Cucumis melo HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 75.8
CsaV3_2G011760 Cucumis sativus L. HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 75.8
Duzib212G0885 Durio zibethinus HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 72.7
Gohir.A10G127900 Gossypium hirsutum HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 78.8
TPR.G11807 Trifolium pratense HOM05D003029 ORTHO05D003413 7.6e-06 55.8 33 72.7
Eucgr.H00027 Eucalyptus grandis HOM05D003029 ORTHO05D003413 1.0e-05 55.5 33 69.7
Potri.001G319600 Populus trichocarpa HOM05D003029 ORTHO05D003413 1.0e-05 55.5 33 72.7


User provided reference genes

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