Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 0.0e+00 2189.5 1135 100.0
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 0.0e+00 2001.5 1129 92.5
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 0.0e+00 1886.3 1136 85.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 0.0e+00 1775.8 1132 82.3
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 0.0e+00 1758.8 1120 81.9
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1740.3 1135 79.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1692.9 1123 77.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 0.0e+00 1680.2 1135 77.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 0.0e+00 1672.5 1135 77.1
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 0.0e+00 1667.9 1136 77.0
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1657.9 1136 76.7
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 0.0e+00 1645.6 1135 76.3
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 0.0e+00 1587.8 1129 72.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1379.8 1136 63.6
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1091.6 1150 51.6
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1086.2 1162 52.1
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 1.4e-308 1063.1 1154 51.4
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 1.8e-306 1056.2 1148 49.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 3.0e-306 1055.4 1160 50.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 8.8e-306 1053.9 1231 48.7
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 1.5e-305 1053.1 1154 51.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 2.8e-304 1048.9 1160 49.9
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 8.5e-301 1037.3 1149 49.5
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 2.5e-300 1035.8 1154 49.6
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 5.5e-300 1034.6 1155 49.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 9.4e-300 1033.9 1160 49.1
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1163 48.6
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 6.3e-296 1021.1 1161 49.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.4e-295 1020.0 1150 49.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 7.7e-294 1014.2 1161 47.0
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 1.0e-293 1013.8 1151 48.0
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 2.5e-292 1009.2 1164 48.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 7.5e-289 997.7 1145 48.6
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 7.5e-289 997.7 1157 48.4
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 2.9e-285 985.7 1143 46.6
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 4.2e-284 981.9 1160 47.2
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 7.2e-284 981.1 1151 47.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 3.1e-279 965.7 1146 46.8
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1163 46.3
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1149 47.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.0e-277 960.7 1208 46.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-275 953.7 1151 47.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 8.0e-275 951.0 1094 48.0
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 2.0e-273 946.4 1155 46.1
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 3.4e-273 945.7 1155 46.8
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 9.8e-273 944.1 1103 46.5
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 2.3e-269 932.9 1150 46.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 6.6e-269 931.4 1156 45.4
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 6.6e-269 931.4 1153 46.3
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 7.3e-268 927.9 1155 46.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.4e-266 923.7 1152 45.6
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 1.4e-266 923.7 1155 45.5
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.0e-265 919.8 1148 44.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 3.7e-264 915.6 1119 45.9
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.1e-263 912.1 1137 45.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 2.1e-259 899.8 1150 44.3
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.1e-258 897.5 1150 44.3
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 1.2e-257 894.0 1139 43.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 2.0e-257 893.3 1150 43.7
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.4e-257 892.1 1154 44.1
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 7.5e-257 891.3 1156 44.0
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.1e-255 887.5 1147 43.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 3.9e-253 879.0 1148 43.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 7.3e-252 874.8 1150 43.0
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.2e-251 874.0 1148 42.9
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.6e-251 873.6 1150 45.2
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 4.7e-251 872.1 1143 44.4
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 8.1e-251 871.3 1157 42.7
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.2e-246 857.4 1120 43.4
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.2e-246 857.4 1152 44.4
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 8.6e-245 851.3 1072 46.0
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.2e-240 836.6 1239 41.6
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 5.1e-237 825.5 1102 44.3
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.2e-233 814.3 1133 42.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.0e-233 813.5 1126 41.6
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.9e-232 809.7 1014 46.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.9e-231 807.0 1167 41.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.9e-229 799.3 1131 41.5
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.9e-224 782.3 1148 40.3
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.5e-222 776.2 1096 42.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.6e-222 775.8 1044 45.0
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.4e-217 759.6 524 72.9
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.4e-217 759.6 1143 40.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 9.3e-215 751.5 1076 41.9
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.0e-213 748.0 1037 41.2
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.1e-212 744.6 1142 39.6
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.9e-207 727.2 1148 38.6
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.0e-205 719.9 1159 37.8
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.8e-197 694.1 958 42.7
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.0e-196 690.6 1067 39.0
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.1e-194 684.9 937 43.3
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.1e-194 682.9 1134 38.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 9.1e-194 681.8 1153 36.9
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.4e-178 630.6 428 76.6
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 5.9e-177 625.9 915 40.9
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.0e-168 598.6 926 38.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.1e-143 515.4 1054 34.6
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.2e-138 495.7 1175 31.4
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.4e-122 444.5 1042 34.1
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 6.2e-118 429.9 1183 29.2
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.5e-108 398.7 655 38.0
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.2e-102 376.7 435 48.3
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.0e-101 374.0 502 43.8
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 6.5e-99 366.7 724 34.1
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.6e-94 352.1 1133 27.6
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.0e-93 346.3 444 46.4
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.9e-82 312.0 335 48.4
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.4e-77 295.0 434 45.2
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.4e-74 285.8 232 58.2
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 6.1e-65 253.8 1345 24.2
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 8.2e-62 243.4 265 50.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.1e-61 241.5 232 51.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.1e-53 214.5 205 54.6
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 3.8e-51 208.0 313 42.5
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 3.6e-49 201.4 155 59.4
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 4.4e-47 194.5 182 54.9
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.9e-38 164.5 123 65.9
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 7.8e-36 157.1 184 45.7
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 6.2e-33 147.5 148 52.7
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 6.2e-33 147.5 148 52.7
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 7.5e-31 140.6 116 58.6
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 7.5e-31 140.6 159 44.7
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 3.9e-27 128.3 132 50.0
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-25 122.5 230 37.0
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.5e-23 114.0 118 49.2
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.7e-22 111.7 185 36.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.2e-21 108.6 1279 22.0
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.2e-20 106.7 96 57.3
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.7e-20 105.5 135 44.4
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.7e-20 105.5 178 37.6
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.5e-20 105.1 96 55.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.5e-20 105.1 96 55.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.0e-19 103.6 180 36.7
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.6e-18 97.8 127 42.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.4e-16 93.2 76 47.4
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 4.0e-16 91.7 147 36.1
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 5.2e-16 91.3 147 36.1
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 6.4e-14 84.3 93 47.3
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 8.4e-14 84.0 90 48.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.9e-13 82.8 55 67.3
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.4e-13 81.3 63 61.9
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 7.1e-13 80.9 80 51.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 8.6e-11 73.9 246 28.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.5e-10 73.2 202 28.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 7.3e-10 70.9 62 58.1
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.2e-09 70.1 58 58.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.6e-09 69.7 79 40.5
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 4.9e-06 58.2 44 59.1
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 8.4e-06 57.4 75 44.0


User provided reference genes

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