Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.4e-90 335.1 188 100.0
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.1e-83 313.5 189 95.2
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.0e-78 295.4 193 91.2
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.3e-77 292.0 188 86.2
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.4e-75 285.8 188 87.8
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.1e-75 283.9 188 83.0
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-74 282.7 188 81.4
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 5.9e-74 281.2 188 82.4
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 5.9e-74 281.2 188 82.4
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 5.9e-74 281.2 188 82.4
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-73 280.0 188 80.9
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 8.5e-73 277.3 188 80.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 8.5e-73 277.3 188 80.9
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 9.4e-72 273.9 188 79.8
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-67 260.4 188 77.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.1e-67 258.8 188 82.4
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-66 255.0 188 75.0
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.4e-62 243.4 188 72.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-61 240.0 178 75.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 6.3e-60 234.6 163 77.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.1e-59 231.9 183 76.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-58 230.3 171 80.1
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-57 226.5 171 78.9
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.3e-57 226.1 181 72.4
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.2e-50 203.8 190 63.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.9e-48 196.4 188 61.7
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.2e-43 179.1 188 58.5
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 5.4e-43 178.3 191 56.0
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.2e-42 177.2 197 53.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.2e-42 177.2 196 53.1
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.7e-42 176.0 193 54.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.0e-42 174.9 188 61.7
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.0e-41 174.1 193 56.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-41 173.7 189 56.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.3e-41 173.7 200 53.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.7e-41 173.3 198 55.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.3e-41 172.9 190 53.7
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.1e-40 170.6 186 57.0
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.5e-40 170.2 187 55.6
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.3e-40 169.1 190 52.6
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.3e-40 168.7 195 51.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.3e-40 167.9 187 56.1
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 9.5e-40 167.5 201 52.2
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.2e-39 167.2 190 52.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 6.2e-39 164.9 192 55.2
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.0e-38 162.2 203 50.2
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 5.2e-38 161.8 197 52.8
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.5e-37 160.2 194 56.2
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 7.5e-37 157.9 200 52.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.3e-36 157.1 188 52.1
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.2e-36 156.4 186 53.8
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.9e-35 153.3 198 49.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.9e-35 153.3 197 48.2
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.2e-34 150.6 197 50.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.1e-34 149.8 208 47.1
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 3.5e-34 149.1 206 47.1
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 4.6e-34 148.7 208 45.2
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.0e-33 147.5 186 52.2
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 2.3e-33 146.4 218 44.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.3e-33 146.4 198 49.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.3e-33 146.4 207 46.4
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 3.0e-33 146.0 215 45.6
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 5.1e-33 145.2 214 50.0
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 8.6e-33 144.4 193 48.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 8.6e-33 144.4 192 47.4
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 1.1e-32 144.1 198 49.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.5e-32 143.7 206 46.1
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.9e-32 143.3 213 42.7
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-32 143.3 189 51.3
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.9e-32 143.3 194 49.5
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.5e-32 142.9 204 45.6
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.3e-32 142.1 189 51.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 9.5e-32 141.0 176 53.4
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 9.5e-32 141.0 208 45.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 9.5e-32 141.0 194 49.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.2e-31 140.6 211 45.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.2e-31 140.6 208 44.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-30 137.5 207 44.4
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.8e-30 136.7 189 50.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.1e-30 136.0 181 45.9
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.1e-30 136.0 213 42.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.0e-30 135.6 186 45.2
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.0e-30 135.6 211 43.6
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.2e-30 135.2 207 44.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 5.2e-30 135.2 174 50.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 6.8e-30 134.8 212 43.9
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.9e-30 134.4 205 43.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.6e-29 132.9 214 44.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.6e-29 132.9 183 49.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.6e-29 132.9 183 49.2
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.4e-29 132.5 187 46.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.6e-29 131.3 183 48.6
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.7e-28 130.2 211 41.2
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 1.7e-28 130.2 174 47.1
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.9e-28 129.4 193 46.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.9e-28 129.4 192 41.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.9e-28 128.6 197 45.2
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 6.4e-28 128.3 220 43.2
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.4e-28 128.3 213 41.3
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 6.4e-28 128.3 227 38.3
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.1e-27 127.5 214 40.7
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.2e-27 125.9 211 40.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.2e-27 125.9 197 45.2
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.2e-27 125.9 219 39.3
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 3.5e-26 122.5 197 40.1
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 7.8e-26 121.3 213 40.4
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 7.8e-26 121.3 212 40.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-25 119.4 186 43.0
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.9e-25 119.0 216 42.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 3.9e-25 119.0 205 43.9
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.6e-25 117.9 190 40.5
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.6e-25 117.9 203 39.4
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.9e-24 116.7 164 47.6
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.3e-24 115.9 184 47.3
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 5.6e-24 115.2 217 44.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 9.6e-24 114.4 190 41.1
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.2e-23 114.0 193 40.4
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.8e-23 112.8 196 39.3
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.6e-23 112.5 189 39.7
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-23 112.5 189 39.7
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.6e-23 112.5 189 39.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 4.7e-23 112.1 190 41.1
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 4.7e-23 112.1 229 39.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 6.2e-23 111.7 190 40.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.8e-22 110.2 202 38.1
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.8e-22 110.2 187 42.8
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.4e-22 109.8 216 40.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-22 109.8 187 42.2
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 3.1e-22 109.4 195 39.0
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 5.2e-22 108.6 212 39.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 6.9e-22 108.2 247 34.4
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.2e-21 107.5 188 39.4
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-21 107.1 191 39.3
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 1.5e-21 107.1 233 34.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.0e-21 106.7 199 35.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 5.8e-21 105.1 217 40.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.8e-21 105.1 95 60.0
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 7.6e-21 104.8 207 36.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 7.6e-21 104.8 195 39.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 3.8e-20 102.4 214 42.1
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 8.4e-20 101.3 189 40.2
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 8.4e-20 101.3 189 40.2
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.4e-19 100.5 184 39.1
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 7.1e-19 98.2 195 44.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 9.3e-19 97.8 204 36.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-18 96.7 185 38.9
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-18 96.7 185 38.9
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.1e-18 96.7 193 38.3
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-18 95.9 189 39.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.6e-18 95.5 102 52.9
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.0e-17 94.4 244 32.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-17 94.0 221 32.1
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.0e-17 92.8 199 40.2
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.5e-16 90.5 83 60.2
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.9e-16 90.1 186 32.3
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 3.3e-16 89.4 194 35.1
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 7.3e-16 88.2 78 61.5
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.8e-15 86.3 223 36.8
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 8.1e-15 84.7 109 48.6
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-14 83.2 186 33.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 5.3e-14 82.0 189 34.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.9e-14 81.6 182 38.5
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.4e-13 79.3 121 43.8
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.9e-12 76.3 179 36.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.4e-11 73.2 187 38.0
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 2.1e-10 70.1 73 57.5
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 6.0e-10 68.6 197 34.5
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.0e-09 66.2 184 28.3
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 5.1e-09 65.5 72 52.8
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 6.7e-09 65.1 56 60.7
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.3e-07 60.8 108 40.7
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.1e-07 60.1 178 31.5
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 6.2e-07 58.5 198 29.3
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 1.4e-06 57.4 180 26.1
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 9.0e-06 54.7 175 32.6


User provided reference genes

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