Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 4.9e-108 394.4 194 100.0
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 6.1e-66 254.6 148 84.5
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 2.2e-60 236.1 148 80.4
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.9e-59 233.0 148 79.7
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 3.7e-55 218.8 140 78.6
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 2.4e-54 216.1 144 75.0
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-53 213.0 140 74.3
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 4.5e-53 211.8 140 75.0
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 4.5e-53 211.8 140 75.0
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.5e-53 211.8 140 74.3
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 1.7e-52 209.9 140 73.6
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.9e-52 209.1 140 75.7
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-51 206.5 141 73.8
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-51 206.5 140 72.9
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 4.3e-51 205.3 139 72.7
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 9.5e-51 204.1 126 77.0
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-50 203.8 163 66.9
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.8e-50 202.6 130 75.4
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 4.7e-50 201.8 139 71.2
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 4.7e-50 201.8 139 71.2
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-48 197.2 129 75.2
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-48 196.1 149 62.4
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-48 196.1 132 72.7
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 2.6e-48 196.1 151 64.2
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 2.6e-48 196.1 149 62.4
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 2.6e-48 196.1 149 62.4
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 3.4e-48 195.7 145 69.7
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 3.4e-48 195.7 141 68.8
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 3.4e-48 195.7 145 69.7
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 4.9e-47 191.8 144 66.7
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-46 190.7 141 67.4
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.8e-46 189.9 141 67.4
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 2.4e-46 189.5 141 66.0
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 3.2e-46 189.1 145 67.6
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 3.2e-46 189.1 145 68.3
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 4.1e-46 188.7 171 59.6
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 4.1e-46 188.7 121 75.2
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 7.0e-46 188.0 141 68.8
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 9.2e-46 187.6 145 66.9
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 9.2e-46 187.6 141 66.0
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 5.9e-45 184.9 169 59.2
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 2.3e-44 183.0 128 67.2
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 4.3e-43 178.7 152 59.2
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-42 176.0 152 59.9
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 8.9e-41 171.0 147 59.9
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.9e-39 166.0 94 84.0
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 3.7e-39 165.6 103 75.7
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 3.7e-39 165.6 140 60.7
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 3.7e-39 165.6 103 75.7
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 4.6e-37 158.7 124 64.5
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-36 156.8 142 61.3
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 3.6e-34 149.1 110 67.3
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 8.9e-33 144.4 90 74.4
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 2.0e-32 143.3 150 54.0
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 2.6e-32 142.9 101 70.3
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 2.6e-32 142.9 147 54.4
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-31 140.2 88 76.1
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 3.7e-31 139.0 168 48.2
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-29 133.3 85 72.9
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 6.6e-28 128.3 111 57.7
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 7.6e-24 114.8 118 46.6
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.3e-23 114.0 112 48.2
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 2.2e-23 113.2 115 47.0
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 8.4e-23 111.3 119 47.1
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.9e-22 110.2 164 39.0
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-22 109.8 144 41.7
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 2.4e-22 109.8 144 41.7
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 4.1e-22 109.0 112 44.6
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 4.6e-21 105.5 112 44.6
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 6.0e-21 105.1 116 41.4
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 7.8e-21 104.8 115 40.0
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-20 104.0 115 41.7
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 1.7e-20 103.6 111 40.5
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.9e-20 102.4 130 38.5
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.1e-20 102.1 111 42.3
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.9e-19 100.1 111 46.8
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 4.3e-19 99.0 110 40.9
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 4.3e-19 99.0 110 40.9
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 5.6e-19 98.6 113 43.4
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 7.3e-19 98.2 124 38.7
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 9.6e-19 97.8 114 43.0
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.6e-18 97.1 103 46.6
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 6.2e-18 95.1 118 42.4
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 6.2e-18 95.1 118 42.4
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-18 94.7 114 40.4
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.1e-18 94.7 104 39.4
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-17 94.0 114 40.4
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 1.8e-17 93.6 109 44.0
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 1.8e-17 93.6 109 44.0
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 4.0e-17 92.4 104 46.2
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 5.2e-17 92.0 151 35.8
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 5.2e-17 92.0 118 40.7
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 8.9e-17 91.3 72 63.9
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.2e-16 90.9 114 40.4
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.2e-16 90.9 114 40.4
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-16 90.9 119 39.5
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-16 90.5 117 40.2
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.5e-16 90.5 99 42.4
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 2.0e-16 90.1 117 40.2
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 2.6e-16 89.7 117 40.2
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 2.6e-16 89.7 114 40.4
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.8e-16 88.6 117 39.3
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 7.6e-16 88.2 113 38.9
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 9.9e-16 87.8 72 62.5
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 9.9e-16 87.8 123 40.7
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.7e-15 87.0 118 35.6
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 6.4e-15 85.1 123 37.4
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 6.4e-15 85.1 115 40.0
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 8.4e-15 84.7 115 40.0
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-14 84.3 129 33.3
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.1e-14 84.3 123 34.1
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-14 84.0 121 42.1
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.4e-14 84.0 116 33.6
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.9e-14 83.6 142 34.5
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-14 83.2 108 38.0
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 5.4e-14 82.0 123 35.0
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 7.1e-14 81.6 116 33.6
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-13 80.5 110 44.5
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 1.6e-13 80.5 121 36.4
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 3.5e-13 79.3 104 38.5
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 3.5e-13 79.3 109 33.9
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 3.5e-13 79.3 109 33.9
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 3.5e-13 79.3 108 37.0
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.5e-13 79.3 120 34.2
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 4.6e-13 79.0 110 44.5
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.3e-12 76.6 120 38.3
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.3e-12 76.6 114 37.7
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.0e-12 76.3 121 38.8
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.0e-12 76.3 67 52.2
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.9e-12 75.9 98 41.8
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 5.1e-12 75.5 108 37.0
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 5.1e-12 75.5 144 29.2
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 6.6e-12 75.1 109 33.9
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 6.6e-12 75.1 128 32.0
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 6.6e-12 75.1 109 33.9
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 6.6e-12 75.1 142 29.6
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-11 74.3 110 37.3
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-11 74.3 110 37.3
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 7.3e-11 71.6 106 36.8
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 9.6e-11 71.2 105 37.1
Peaxi162Scf00002g01721 Petunia axillaris HOM05D008086 ORTHO05D010560 3.6e-10 69.3 100 36.0
CAN.G1218.23 Capsicum annuum HOM05D008086 ORTHO05D010560 6.2e-10 68.6 100 35.0
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-10 68.2 115 32.2
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-10 68.2 110 33.6
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.1e-10 68.2 89 36.0
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-09 67.8 112 34.8
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-09 67.8 112 34.8
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-09 67.8 112 34.8
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 1.1e-09 67.8 100 35.0
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-09 67.4 48 58.3
PGSC0003DMG400004806 Solanum tuberosum HOM05D008086 ORTHO05D010560 1.4e-09 67.4 100 35.0
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 1.8e-09 67.0 113 34.5
Solyc08g078720.3 Solanum lycopersicum HOM05D008086 ORTHO05D010560 5.3e-09 65.5 100 34.0
Nitab4.5_0008481g0040 Nicotiana tabacum HOM05D008086 ORTHO05D010560 2.6e-08 63.2 97 36.1
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 3.4e-08 62.8 97 35.1
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 3.4e-08 62.8 114 34.2
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 4.9e-07 58.9 89 39.3
C03p62430 Brassica napus HOM05D008086 ORTHO05D004972 1.1e-06 57.8 47 63.8
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-06 56.6 102 32.4
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-06 56.6 102 32.4
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 2.4e-06 56.6 102 32.4
Dinv39135 Davidia involucrata HOM05D009070 ORTHO05D010560 3.2e-06 56.2 112 30.4
CiPaw.12G109200 Carya illinoinensis HOM05D001099 ORTHO05D000958 7.1e-06 55.1 119 29.4
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 9.3e-06 54.7 54 48.1
Cfa012707 Carpinus fangiana HOM05D001099 ORTHO05D000958 9.3e-06 54.7 87 37.9


User provided reference genes

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