Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.3e-311 1070.8 541 100.0
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 4.2e-306 1053.9 541 98.2
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.4e-290 1002.3 542 93.4
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 8.2e-286 986.5 541 92.4
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 3.1e-285 984.6 541 92.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 4.2e-282 974.2 542 90.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 5.5e-282 973.8 542 90.2
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.7e-281 971.5 542 89.9
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-280 968.8 541 89.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-280 968.8 541 89.8
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 8.8e-280 966.5 541 89.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-279 965.7 541 89.8
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.0e-279 965.3 542 89.5
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 7.4e-279 963.4 533 91.9
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 9.7e-279 963.0 538 89.2
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 9.7e-279 963.0 538 89.2
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 9.7e-279 963.0 538 89.2
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-278 962.2 538 89.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 2.2e-278 961.8 541 89.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 6.3e-278 960.3 537 89.8
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-276 955.7 538 89.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 9.4e-274 946.4 566 85.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.8e-262 908.3 520 87.7
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 6.4e-246 854.0 543 81.4
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-229 799.7 526 76.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.2e-228 796.6 534 76.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.6e-228 796.2 525 76.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 2.7e-228 795.4 532 76.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.3e-227 793.1 537 76.2
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.3e-227 792.3 526 75.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.0e-227 792.0 543 75.1
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 6.6e-227 790.8 531 75.9
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 6.6e-227 790.8 535 75.5
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.3e-226 788.5 536 74.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.3e-226 788.1 537 75.2
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.1e-225 785.8 526 75.3
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.8e-224 782.7 532 75.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 8.9e-224 780.4 542 73.4
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 4.4e-223 778.1 519 75.0
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 4.4e-223 778.1 527 74.2
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 7.6e-223 777.3 524 75.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.9e-222 775.4 527 73.8
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.4e-221 773.1 526 73.6
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 5.4e-221 771.2 530 74.0
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.7e-220 768.8 524 73.7
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.5e-220 768.5 531 73.3
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 7.8e-220 767.3 538 72.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.3e-219 765.8 523 74.6
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 4.7e-217 758.1 534 72.3
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 4.7e-217 758.1 525 73.3
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.7e-217 758.1 529 71.6
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 6.9e-216 754.2 541 70.8
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 7.6e-215 750.7 531 71.9
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.9e-215 750.4 525 72.6
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 3.8e-214 748.4 462 82.5
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 3.8e-214 748.4 528 71.6
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 4.9e-214 748.0 537 72.1
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 8.4e-214 747.3 528 72.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.2e-213 745.3 462 81.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 3.9e-211 738.4 539 70.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.1e-211 738.0 536 69.8
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 8.7e-211 737.3 492 75.8
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-210 736.5 525 70.9
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 7.3e-210 734.2 538 69.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.8e-209 732.3 539 69.4
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 4.8e-209 731.5 531 69.5
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 8.1e-209 730.7 527 70.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 6.9e-208 727.6 531 70.2
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 6.9e-208 727.6 496 74.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 1.2e-207 726.9 524 70.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 2.0e-207 726.1 511 72.6
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.6e-207 725.7 520 72.3
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.7e-206 723.0 537 68.7
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 532 68.8
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.7e-206 723.0 524 69.3
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 2.2e-206 722.6 504 72.0
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.9e-206 722.2 537 68.3
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.9e-206 722.2 524 70.2
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 6.4e-206 721.1 526 68.8
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.2e-204 716.8 532 68.6
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.1e-204 716.1 531 68.4
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 6.0e-204 714.5 532 68.2
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 6.7e-203 711.1 529 70.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.5e-202 709.9 475 75.8
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 7.4e-202 707.6 520 69.0
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.3e-201 706.8 475 75.4
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.6e-201 706.4 524 68.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.1e-201 706.1 517 70.4
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 5.8e-199 698.0 532 65.8
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.9e-198 695.7 435 80.9
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.9e-198 694.9 532 66.9
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.6e-196 688.3 529 65.6
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 6.0e-196 688.0 529 65.6
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.3e-195 686.8 531 64.2
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 5.1e-195 684.9 529 65.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 6.7e-195 684.5 528 65.3
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.1e-194 683.7 527 64.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.6e-193 679.9 531 63.7
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 8.1e-193 677.6 525 65.9
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 8.1e-193 677.6 547 64.0
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.4e-192 676.0 525 65.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 3.4e-191 672.2 536 63.2
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.3e-190 670.2 533 67.2
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 4.9e-190 668.3 541 62.5
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.9e-190 668.3 460 72.0
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 2.5e-189 666.0 534 63.1
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 9.3e-189 664.1 529 62.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 9.6e-186 654.1 453 74.6
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.4e-184 649.4 528 61.9
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.2e-183 647.1 466 68.0
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.7e-182 643.3 527 60.5
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 6.5e-182 641.3 541 60.3
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 6.1e-180 634.8 445 73.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.9e-173 613.2 533 58.9
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.7e-169 599.0 390 76.9
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.2e-166 589.7 387 76.2
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.3e-161 573.9 534 56.2
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.4e-157 557.8 383 72.6
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 9.4e-157 557.8 466 60.5
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 5.0e-150 535.4 395 67.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.5e-149 533.1 541 54.7
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 1.3e-145 520.8 314 80.6
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.8e-145 519.6 389 66.8
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 4.9e-137 492.3 355 69.6
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-136 491.1 359 68.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-130 471.1 470 49.6
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.1e-128 464.5 330 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 1.5e-125 454.1 522 46.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-124 451.1 457 49.5
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.0e-119 433.7 559 43.8
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 7.5e-114 415.2 541 42.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 6.2e-100 369.0 226 81.9
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.6e-93 345.9 194 88.1
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.2e-87 328.2 286 63.3
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 5.3e-75 286.2 151 96.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-61 241.9 191 66.0
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.4e-59 235.0 179 67.6
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.4e-51 207.6 171 60.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.5e-45 188.3 139 67.6
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.1e-43 182.2 152 61.8
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 4.1e-43 180.3 163 57.1
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.6e-42 178.3 143 62.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 4.5e-34 150.2 139 57.6
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.2e-29 135.6 97 66.0
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 2.0e-29 134.8 149 51.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 5.9e-26 123.2 123 54.5
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 6.8e-22 109.8 76 71.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 2.2e-20 104.8 71 69.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 4.9e-20 103.6 497 23.9
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.4e-19 102.1 493 22.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 1.3e-12 79.0 63 60.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 1.3e-12 79.0 63 60.3
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 5.0e-09 67.0 33 90.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 6.6e-09 66.6 69 49.3
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 5.6e-08 63.5 45 60.0
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 7.3e-08 63.2 45 62.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 8.0e-07 59.7 46 56.5
Mapoly0047s0018 Marchantia polymorpha HOM05D011351 ORTHO05D013707 5.2e-06 57.0 130 30.0


User provided reference genes

Program Settings