Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.7e-46 189.1 105 100.0
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.1e-40 169.9 98 96.9
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.0e-38 161.0 99 91.9
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 4.7e-36 154.5 97 89.7
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 4.1e-32 141.4 98 82.7
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 4.1e-32 141.4 98 82.7
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.1e-32 141.4 96 86.5
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.3e-32 141.0 96 86.5
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.6e-31 139.4 96 85.4
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.5e-31 138.3 96 84.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.5e-31 138.3 96 84.4
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.5e-31 138.3 96 84.4
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 7.7e-31 137.1 96 83.3
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.0e-30 136.7 96 82.3
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.0e-30 136.7 96 82.3
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.9e-30 135.2 96 81.2
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 3.6e-28 128.3 96 79.2
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 3.6e-28 128.3 96 79.2
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.8e-27 125.9 96 76.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.2e-22 109.0 96 70.8
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.9e-21 105.9 97 61.9
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.5e-21 105.5 95 69.5
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 6.8e-19 97.4 104 57.7
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 8.8e-19 97.1 95 62.1
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.2e-18 96.7 97 59.8
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.5e-18 96.3 96 60.4
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.4e-18 95.1 95 64.2
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 3.4e-18 95.1 97 66.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 7.5e-18 94.0 96 60.4
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 7.5e-18 94.0 81 67.9
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.8e-18 93.6 86 65.1
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.3e-17 93.2 96 59.4
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.3e-17 93.2 96 65.6
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.2e-17 92.4 96 60.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.8e-17 92.0 96 56.2
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 8.3e-17 90.5 96 63.5
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-16 90.1 96 63.5
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.8e-16 89.4 97 62.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.8e-16 89.4 96 55.2
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.4e-16 89.0 102 56.9
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.1e-16 88.6 96 64.6
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.1e-16 88.6 96 60.4
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 5.4e-16 87.8 95 60.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 9.1e-16 87.0 103 56.3
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.2e-15 86.7 96 63.5
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 2.7e-15 85.5 103 57.3
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.7e-15 85.5 98 63.3
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.7e-15 85.5 98 63.3
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.7e-15 85.5 104 55.8
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.9e-15 84.3 103 52.4
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 5.9e-15 84.3 97 55.7
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.2e-14 82.4 98 62.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.8e-14 81.6 95 56.8
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 5.0e-14 81.3 96 55.2
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 6.5e-14 80.9 94 53.2
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.1e-13 80.1 103 54.4
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 1.1e-13 80.1 97 52.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.5e-13 79.7 95 55.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.5e-13 79.7 96 51.0
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.9e-13 79.3 96 56.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 2.5e-13 79.0 96 54.2
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.5e-13 79.0 96 55.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.2e-13 78.6 95 53.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 5.5e-13 77.8 95 52.6
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 5.5e-13 77.8 95 52.6
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.5e-13 77.8 96 55.2
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 7.2e-13 77.4 96 52.1
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.2e-12 76.6 95 50.5
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.2e-12 76.6 98 54.1
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.1e-12 75.9 96 49.0
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.1e-12 75.9 95 54.7
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.1e-12 75.9 95 54.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.7e-12 74.7 95 53.7
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 1.8e-11 72.8 96 55.2
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.3e-11 72.4 96 52.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.0e-11 72.0 97 53.6
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 4.0e-11 71.6 96 49.0
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 8.8e-11 70.5 98 51.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 1.2e-10 70.1 96 51.0
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 1.5e-10 69.7 97 50.5
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.0e-10 69.3 100 50.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.6e-10 68.9 103 49.5
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.2e-09 65.9 97 48.5
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.2e-09 65.9 96 50.0
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.2e-09 65.9 89 52.8
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.2e-09 65.9 89 52.8
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 6.3e-09 64.3 97 52.6
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 6.3e-09 64.3 97 51.5
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.4e-08 63.2 96 49.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.8e-08 62.8 97 47.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.8e-08 62.8 104 47.1
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.8e-08 62.8 96 44.8
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 3.1e-08 62.0 97 52.6
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.1e-08 62.0 73 54.8
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 4.1e-08 61.6 50 68.0
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 4.1e-08 61.6 50 68.0
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.1e-08 61.6 103 47.6
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.0e-08 60.8 107 46.7
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.0e-08 60.8 93 47.3
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 9.2e-08 60.5 97 47.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 5.9e-07 57.8 101 46.5
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 7.7e-07 57.4 49 63.3
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.0e-06 57.0 56 62.5
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.0e-06 57.0 43 67.4
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 1.0e-06 57.0 99 45.5
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.0e-06 57.0 100 49.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.3e-06 56.6 50 62.0
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 1.7e-06 56.2 104 45.2
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.7e-06 56.2 63 52.4
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 2.3e-06 55.8 51 62.7
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.3e-06 55.8 37 75.7
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.9e-06 55.5 58 58.6
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 3.8e-06 55.1 55 58.2
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.8e-06 55.1 58 53.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.0e-06 54.7 100 50.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 6.6e-06 54.3 62 51.6
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 6.6e-06 54.3 62 51.6
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 6.6e-06 54.3 57 54.4
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 6.6e-06 54.3 40 70.0
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 6.6e-06 54.3 57 56.1
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.6e-06 53.9 55 52.7
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 8.6e-06 53.9 62 53.2


User provided reference genes

Program Settings