Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 8.2e-213 743.8 478 100.0
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 3.0e-183 645.6 478 85.8
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.7e-181 639.8 478 84.5
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 6.6e-170 601.3 475 79.8
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 3.2e-164 582.4 471 81.7
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 3.0e-162 575.9 472 76.3
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.4e-159 567.0 475 75.6
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 8.9e-159 564.3 475 75.2
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.5e-158 563.5 473 76.3
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 3.4e-158 562.4 477 75.7
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 9.8e-150 534.3 471 74.7
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.1e-119 434.5 467 66.0
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.3e-114 417.5 470 65.3
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 1.8e-98 364.0 431 52.4
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 9.1e-79 298.5 176 86.4
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 1.2e-78 298.1 472 53.8
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 1.0e-69 268.5 476 50.4
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 2.1e-67 260.8 476 52.1
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-64 250.4 468 50.4
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-64 250.4 468 50.4
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 2.8e-64 250.4 468 50.4
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 8.3e-64 248.8 475 49.9
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 6.5e-61 239.2 444 51.8
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.5e-60 237.3 471 50.5
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.2e-60 236.5 470 51.9
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 7.2e-60 235.7 477 50.5
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 4.7e-59 233.0 468 49.8
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 6.1e-59 232.6 477 50.1
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 8.0e-59 232.3 475 51.4
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.0e-58 229.9 472 43.6
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 4.4e-57 226.5 478 49.8
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.3e-56 224.9 473 48.4
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 2.8e-56 223.8 476 49.6
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 2.8e-56 223.8 446 43.3
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 3.7e-56 223.4 473 48.4
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.9e-56 223.0 472 47.9
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 4.9e-56 223.0 443 50.3
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 6.3e-56 222.6 476 46.8
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 8.3e-56 222.2 476 45.0
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 1.8e-55 221.1 472 48.7
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 5.9e-54 216.1 446 49.3
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 2.3e-53 214.2 472 47.5
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 6.6e-53 212.6 398 34.9
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 2.5e-52 210.7 446 49.3
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 5.6e-52 209.5 433 50.6
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 9.5e-52 208.8 478 48.3
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 9.5e-52 208.8 446 49.8
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.2e-51 208.4 475 46.1
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.1e-51 207.6 461 49.0
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 2.1e-51 207.6 472 47.5
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 2.8e-51 207.2 426 45.5
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 8.0e-51 205.7 472 46.4
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.3e-50 204.1 470 45.1
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 1.2e-49 201.8 470 49.4
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 1.5e-49 201.4 471 48.2
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 2.9e-48 197.2 444 47.7
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 8.3e-48 195.7 466 44.0
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 1.8e-47 194.5 478 45.6
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 5.4e-47 193.0 467 46.3
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 4.6e-46 189.9 473 44.6
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 5.9e-46 189.5 396 48.2
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.3e-45 187.6 475 44.8
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 6.6e-45 186.0 461 42.5
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 8.6e-45 185.7 445 45.4
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 8.6e-45 185.7 429 44.5
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 5.6e-44 183.0 469 44.8
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 9.5e-44 182.2 471 41.8
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 3.6e-43 180.3 476 46.2
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 6.8e-42 176.0 439 41.2
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 1.2e-41 175.3 475 44.8
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 1.7e-40 171.4 454 43.0
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 2.9e-40 170.6 476 45.2
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 1.1e-39 168.7 445 38.2
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 2.3e-37 161.0 476 43.1
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 2.3e-37 161.0 474 43.2
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.1e-36 158.7 170 50.6
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 4.3e-36 156.8 428 41.1
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 7.3e-36 156.0 439 44.9
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.6e-35 154.8 176 44.9
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.2e-34 149.8 452 44.7
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 6.8e-34 149.4 394 43.4
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.6e-33 147.5 374 48.7
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.8e-33 145.6 135 55.6
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 9.8e-33 145.6 434 45.4
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 1.3e-32 145.2 445 36.4
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 3.7e-32 143.7 376 49.7
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 3.2e-31 140.6 160 45.0
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 2.1e-30 137.9 429 43.6
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.3e-29 135.2 430 44.2
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 2.3e-29 134.4 415 45.8
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 5.1e-29 133.3 161 42.9
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.1e-29 133.3 157 47.8
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 1.1e-28 132.1 477 41.3
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.9e-28 131.3 426 40.1
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 4.3e-28 130.2 452 44.0
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 5.6e-28 129.8 438 43.6
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 7.3e-28 129.4 352 48.9
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.4e-26 125.2 355 50.4
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.0e-25 121.3 121 50.4
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 2.6e-25 120.9 133 45.1
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 7.6e-25 119.4 164 40.9
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.3e-24 118.6 121 49.6
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 3.8e-24 117.1 133 45.1
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 3.8e-24 117.1 342 49.4
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 6.4e-24 116.3 172 37.2
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 1.9e-23 114.8 177 37.3
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 9.2e-23 112.5 155 41.9
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 1.6e-22 111.7 124 46.0
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 3.5e-22 110.5 147 44.9
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 8.6e-21 105.9 487 33.9
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 1.9e-20 104.8 129 39.5
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 5.6e-20 103.2 115 48.7
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.1e-18 99.0 120 46.7
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 3.4e-17 94.0 97 46.4
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.7e-16 91.7 108 44.4
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.8e-16 90.5 101 42.6
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 6.2e-11 73.2 134 33.6
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 1.4e-10 72.0 236 51.3
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 2.4e-10 71.2 85 45.9
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 2.0e-09 68.2 76 47.4
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 3.4e-09 67.4 74 45.9
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 4.5e-09 67.0 54 55.6
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 4.5e-09 67.0 112 31.2
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 8.4e-08 62.8 156 24.4
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 2.4e-07 61.2 104 32.7
Glyma.01G235800 Glycine max HOM05D000424 ORTHO05D000355 1.2e-06 58.9 152 30.3
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.7e-06 57.8 61 47.5
Atru.chr1.3077 Acer truncatum HOM05D007335 ORTHO05D009113 6.0e-06 56.6 138 31.2
Migut.I00790 Erythranthe guttata HOM05D000424 ORTHO05D000355 6.0e-06 56.6 138 29.0


User provided reference genes

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