Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.4e-144 516.5 311 100.0
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 3.9e-131 471.9 321 81.9
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 1.7e-126 456.4 310 82.3
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 3.7e-121 438.7 317 80.8
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.1e-120 437.2 297 82.8
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.8e-120 436.4 303 79.5
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 4.0e-120 435.3 302 81.5
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 6.9e-120 434.5 309 80.3
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 6.9e-120 434.5 309 80.3
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 1.2e-119 433.7 297 82.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 3.4e-119 432.2 312 78.2
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 1.7e-118 429.9 303 79.9
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 1.7e-118 429.9 303 79.9
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 1.4e-117 426.8 302 79.8
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 1.1e-106 390.6 369 71.3
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 3.2e-101 372.5 304 69.1
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 2.6e-98 362.8 297 74.7
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 8.2e-97 357.8 312 67.9
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 1.1e-96 357.5 300 70.0
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 2.0e-95 353.2 310 65.2
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 1.7e-94 350.1 300 65.0
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 2.2e-94 349.7 303 61.7
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 2.9e-94 349.4 309 62.8
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 6.5e-94 348.2 309 61.2
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 5.5e-93 345.1 318 58.2
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 1.2e-92 344.0 316 68.4
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.6e-92 343.6 306 65.0
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 6.1e-92 341.7 306 66.0
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 6.1e-92 341.7 306 66.0
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 6.1e-92 341.7 318 62.9
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 3.9e-91 339.0 339 64.9
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.1e-90 337.4 322 62.4
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 2.0e-90 336.7 314 55.7
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 5.7e-90 335.1 313 62.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.7e-90 335.1 325 54.5
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 7.4e-90 334.7 313 61.3
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 7.4e-90 334.7 331 53.8
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 9.7e-90 334.3 332 53.6
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 2.2e-89 333.2 334 62.0
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 3.7e-89 332.4 306 64.7
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 4.8e-89 332.0 312 59.6
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 6.3e-89 331.6 329 55.6
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 1.1e-88 330.9 321 63.9
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 4.1e-88 328.9 325 53.5
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.6e-87 327.0 322 62.7
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.0e-87 326.6 319 59.6
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 2.6e-87 326.2 318 64.5
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 4.5e-87 325.5 325 56.6
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 1.7e-86 323.6 330 56.1
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 3.8e-86 322.4 307 60.9
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 3.8e-86 322.4 338 62.4
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.1e-85 320.9 308 53.2
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 1.1e-85 320.9 344 56.7
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 1.5e-85 320.5 315 55.6
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 1.5e-85 320.5 306 63.4
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 1.9e-85 320.1 319 62.1
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 3.2e-85 319.3 334 60.2
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 4.2e-85 318.9 341 52.8
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 4.2e-85 318.9 328 61.3
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 5.5e-85 318.5 325 56.9
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 7.2e-85 318.2 333 59.2
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 2.7e-84 316.2 324 61.4
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 3.6e-84 315.8 311 55.0
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 8.0e-84 314.7 318 57.2
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 1.8e-83 313.5 301 62.8
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 2.3e-83 313.2 320 60.6
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 2.3e-83 313.2 329 52.6
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 2.3e-83 313.2 342 52.9
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 6.8e-83 311.6 311 54.7
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 1.2e-82 310.8 322 61.5
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 1.5e-82 310.5 308 62.0
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 2.0e-82 310.1 343 51.3
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 2.0e-82 310.1 318 62.3
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 5.7e-82 308.5 347 50.7
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 3.7e-81 305.8 308 58.1
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 4.8e-81 305.4 298 59.7
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.2e-79 300.8 309 55.3
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 5.9e-79 298.5 331 50.2
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 6.5e-78 295.0 402 43.0
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.9e-77 293.5 297 56.6
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.9e-77 293.5 297 56.6
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.9e-77 293.5 334 52.4
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 9.4e-77 291.2 340 55.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 2.3e-75 286.6 294 59.9
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 2.3e-75 286.6 262 63.7
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 8.8e-75 284.6 185 75.1
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.2e-73 280.0 287 55.7
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 3.7e-73 279.3 166 85.5
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 6.6e-70 268.5 203 65.0
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.1e-69 267.7 198 66.2
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 1.2e-68 264.2 301 54.2
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 2.1e-68 263.5 293 51.2
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 3.6e-68 262.7 324 46.9
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.0e-67 261.2 249 59.4
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 2.3e-67 260.0 317 53.9
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 3.0e-67 259.6 183 67.2
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 3.0e-67 259.6 183 67.2
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 1.2e-66 257.7 267 56.2
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 2.6e-66 256.5 259 56.4
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 5.7e-66 255.4 318 44.0
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 1.7e-65 253.8 145 88.3
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.0e-59 234.6 348 47.1
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 8.3e-57 224.9 335 40.9
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 1.4e-56 224.2 192 55.2
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.6e-55 220.7 238 60.5
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 1.8e-51 207.2 211 51.7
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 4.4e-50 202.6 190 55.8
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 4.6e-47 192.6 306 38.2
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 1.8e-43 180.6 314 38.5
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 1.5e-42 177.6 151 70.2
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 3.5e-39 166.4 151 54.3
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 5.6e-37 159.1 409 33.3
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 1.3e-25 121.3 120 52.5
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 2.3e-22 110.5 78 67.9
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.9e-21 107.5 345 26.7
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 9.6e-21 105.1 175 37.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 6.4e-17 92.4 137 40.9
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 8.4e-17 92.0 62 69.4
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 3.2e-16 90.1 53 79.2
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 9.3e-16 88.6 54 81.5
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 1.2e-15 88.2 55 65.5
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.5e-15 86.7 50 80.0
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 7.9e-15 85.5 134 36.6
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 2.3e-14 84.0 54 75.9
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 3.9e-14 83.2 138 38.4
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.4e-09 65.5 87 44.8
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 1.1e-08 65.1 44 72.7
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.9e-08 64.3 60 53.3


User provided reference genes

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