Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 1.6e-73 279.3 134 100.0
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 7.0e-69 263.8 134 93.3
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 1.2e-60 236.5 136 86.8
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 5.9e-60 234.2 134 82.8
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.1e-50 203.4 133 75.9
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 1.8e-48 196.1 136 73.5
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 1.8e-48 196.1 136 73.5
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 1.8e-48 196.1 136 73.5
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 6.8e-48 194.1 136 73.5
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 6.8e-48 194.1 136 73.5
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 1.2e-41 173.3 134 67.9
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 1.2e-41 173.3 134 67.9
BcaC06g31447 Brassica carinata HOM05D011808 ORTHO05D006110 3.9e-35 151.8 130 60.8
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.5e-15 86.7 132 41.7
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.7e-14 82.0 141 37.6
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 8.4e-14 80.9 119 41.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.4e-13 80.1 123 44.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.2e-13 79.0 141 36.9
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 5.4e-13 78.2 141 36.2
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 9.2e-13 77.4 125 40.0
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 9.2e-13 77.4 125 40.0
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 9.2e-13 77.4 125 40.8
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.2e-12 77.0 130 40.8
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.7e-12 75.9 123 43.1
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 4.6e-12 75.1 119 40.3
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.8e-12 74.3 120 39.2
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.3e-11 73.6 123 39.8
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.7e-11 73.2 121 40.5
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.0e-11 72.4 123 42.3
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.0e-11 72.4 120 38.3
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 8.6e-11 70.9 127 40.2
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.1e-10 70.5 122 37.7
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.5e-10 69.3 137 35.8
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 3.3e-10 68.9 120 35.0
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 3.3e-10 68.9 138 38.4
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 4.3e-10 68.6 126 38.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 5.6e-10 68.2 134 38.1
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 9.6e-10 67.4 122 38.5
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.6e-09 66.6 131 35.1
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.6e-09 66.6 135 40.0
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.8e-09 65.9 127 40.2
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 4.7e-09 65.1 123 39.0
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.7e-09 65.1 122 36.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 6.2e-09 64.7 135 39.3
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 8.1e-09 64.3 123 36.6
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 8.1e-09 64.3 124 39.5
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.1e-08 63.9 125 37.6
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 1.8e-08 63.2 133 38.3
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.8e-08 63.2 128 35.9
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 2.4e-08 62.8 113 40.7
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 2.4e-08 62.8 124 38.7
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.0e-08 62.0 130 36.9
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.0e-08 62.0 130 36.9
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 4.0e-08 62.0 134 34.3
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 6.8e-08 61.2 124 38.7
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.5e-07 60.1 122 39.3
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 2.0e-07 59.7 83 45.8
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 2.0e-07 59.7 123 37.4
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 2.6e-07 59.3 133 33.8
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 4.4e-07 58.5 117 31.6
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 7.6e-07 57.8 130 34.6
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 7.6e-07 57.8 124 37.1
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 9.9e-07 57.4 136 34.6
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 9.9e-07 57.4 119 35.3
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-06 57.0 130 36.2
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-06 57.0 121 37.2
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.3e-06 57.0 130 34.6
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.3e-06 57.0 127 37.8
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 1.7e-06 56.6 117 35.9
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.7e-06 56.6 76 47.4
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.7e-06 56.6 124 34.7
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 1.7e-06 56.6 139 35.3
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 2.2e-06 56.2 120 38.3
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.2e-06 56.2 76 47.4
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 2.2e-06 56.2 76 47.4
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.2e-06 56.2 127 35.4
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.2e-06 56.2 127 35.4
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.9e-06 55.8 127 34.6
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.9e-06 55.8 127 36.2
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 3.8e-06 55.5 133 34.6
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.8e-06 55.5 123 34.1
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 3.8e-06 55.5 120 35.8
SGA_v2.0_scaffold6G03157 Striga asiatica HOM05D006292 ORTHO05D006110 3.8e-06 55.5 77 36.4
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 4.9e-06 55.1 139 32.4
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 4.9e-06 55.1 121 35.5
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 6.4e-06 54.7 119 33.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 8.4e-06 54.3 125 33.6


User provided reference genes

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