Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 3.9e-143 512.3 469 100.0
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.0e-134 483.4 469 91.3
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.5e-122 441.8 469 73.6
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.1e-116 424.5 469 75.5
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.2e-113 412.9 469 75.3
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 5.4e-108 395.6 469 74.4
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 5.9e-107 392.1 469 84.2
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 7.7e-107 391.7 469 65.5
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 7.7e-107 391.7 469 65.5
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.3e-98 363.6 469 63.5
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 8.9e-95 351.7 464 79.3
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.3e-77 292.0 460 68.9
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.3e-66 258.1 464 75.2
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 5.3e-63 246.1 462 62.3
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.5e-62 244.6 464 62.9
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.2e-59 235.0 457 63.9
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.1e-55 221.9 464 70.5
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 2.2e-53 214.2 464 69.6
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.1e-52 211.8 457 70.2
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.7e-51 207.2 459 69.7
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.3e-50 204.1 457 69.8
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.3e-50 204.1 457 69.8
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 7.4e-49 199.1 459 69.1
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 2.6e-30 137.5 443 48.3
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.7e-29 134.8 464 63.4
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.9e-28 131.3 450 45.3
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.1e-25 122.1 84 73.8
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 7.4e-25 119.4 173 63.0
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 9.7e-25 119.0 173 59.5
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 6.3e-24 116.3 178 50.6
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 5.3e-23 113.2 171 64.3
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 2.0e-22 111.3 179 59.2
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.6e-22 110.9 171 59.1
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.2e-19 102.1 66 71.2
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.0e-18 99.0 170 53.5
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.3e-18 97.8 429 56.2
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 3.0e-18 97.4 72 61.1
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 8.8e-18 95.9 190 54.2
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 2.0e-17 94.7 67 68.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 5.7e-17 93.2 70 60.0
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 5.7e-17 93.2 78 57.7
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.3e-16 92.0 66 63.6
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.3e-16 92.0 70 58.6
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.3e-16 92.0 71 62.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.7e-16 91.7 66 62.1
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.7e-16 91.7 66 62.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.8e-16 90.9 66 66.7
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 3.7e-16 90.5 167 32.9
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 3.7e-16 90.5 77 59.7
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.7e-16 90.5 67 59.7
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.8e-16 90.1 66 66.7
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 4.8e-16 90.1 64 64.1
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 6.3e-16 89.7 67 64.2
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 8.2e-16 89.4 66 60.6
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 8.2e-16 89.4 66 60.6
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.4e-15 88.6 66 65.2
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.4e-15 88.6 67 62.7
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.8e-15 88.2 80 52.5
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.8e-15 88.2 67 55.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 1.8e-15 88.2 67 55.2
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 2.4e-15 87.8 65 58.5
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.4e-15 87.8 77 58.4
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 7.0e-15 86.3 70 57.1
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 7.0e-15 86.3 77 54.5
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.0e-15 86.3 66 53.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.2e-14 85.5 68 60.3
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.6e-14 85.1 66 63.6
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.6e-14 85.1 66 63.6
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.6e-14 84.3 166 56.0
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 54.5
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.6e-14 84.3 74 60.8
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 3.5e-14 84.0 79 53.2
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 5.9e-14 83.2 78 51.3
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 7.7e-14 82.8 66 53.0
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 7.7e-14 82.8 88 42.0
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.3e-13 82.0 81 51.9
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.7e-13 81.6 171 55.6
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 49.4
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.2e-13 81.3 79 45.6
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 2.2e-13 81.3 66 57.6
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.2e-13 81.3 77 53.2
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.8e-13 80.5 77 53.2
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 5.0e-13 80.1 80 51.2
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 5.0e-13 80.1 77 55.8
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.5e-13 79.7 79 44.3
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 6.5e-13 79.7 75 48.0
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 8.5e-13 79.3 77 49.4
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 8.5e-13 79.3 171 56.1
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.5e-12 78.6 77 53.2
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.5e-12 78.6 74 56.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.5e-12 78.6 79 50.6
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.9e-12 78.2 171 54.4
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.5e-12 77.8 66 57.6
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.5e-12 77.8 76 52.6
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.2e-12 77.4 66 59.1
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.5e-12 76.6 79 43.0
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 7.2e-12 76.3 77 50.6
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.2e-11 75.5 69 56.5
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.6e-11 73.9 66 53.0
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 3.6e-11 73.9 77 48.1
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.0e-11 72.8 77 45.5
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.8e-10 71.6 45 68.9
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 2.3e-10 71.2 55 56.4
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.0e-10 70.9 72 47.2
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 3.0e-10 70.9 66 51.5
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.0e-10 70.9 43 74.4
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 5.2e-10 70.1 48 68.8
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.7e-10 69.7 67 50.7
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 6.7e-10 69.7 74 43.2
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 6.7e-10 69.7 57 56.1
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 8.8e-10 69.3 150 30.0
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.8e-10 69.3 79 44.3
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.0e-09 68.2 67 50.7
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 2.6e-09 67.8 77 44.2
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.6e-09 67.8 57 52.6
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 7.5e-09 66.2 55 60.0
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.3e-08 65.5 44 68.2
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 4.8e-08 63.5 43 62.8
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 6.3e-08 63.2 75 45.3
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 1.1e-07 62.4 136 61.8
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.4e-07 62.0 70 41.4
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.4e-07 61.2 47 57.4
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.4e-07 61.2 47 57.4
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 2.4e-07 61.2 50 58.0
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.1e-07 60.5 74 41.9
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 5.3e-07 60.1 58 48.3
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 7.0e-07 59.7 135 62.2
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 7.0e-07 59.7 45 64.4
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 9.1e-07 59.3 40 62.5
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 2.7e-06 57.8 51 51.0


User provided reference genes

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