Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 1.6e-32 142.1 72 100.0
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 1.1e-25 119.4 72 87.5
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 1.1e-25 119.4 72 87.5
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 1.1e-25 119.4 72 87.5
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 1.9e-25 118.6 72 87.5
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 1.6e-24 115.5 72 84.7
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 1.8e-23 112.1 72 80.6
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 9.0e-23 109.8 72 80.6
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 9.0e-23 109.8 72 80.6
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 9.0e-23 109.8 72 80.6
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 9.0e-23 109.8 72 80.6
Carub.0008s0161 Capsella rubella HOM05D010376 ORTHO05D006663 1.2e-22 109.4 72 81.9
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 1.2e-22 109.4 71 80.3
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.5e-22 109.0 72 81.9
BolC9t57226H Brassica oleracea HOM05D010376 ORTHO05D006663 9.3e-20 99.8 75 73.3
BolC9t55718H Brassica oleracea HOM05D010376 ORTHO05D006663 1.0e-18 96.3 74 70.3
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 1.3e-13 79.3 76 56.6
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 6.7e-10 67.0 70 42.9
A09p22230 Brassica napus HOM05D010376 ORTHO05D006663 8.8e-10 66.6 72 58.3
BolC2t10768H Brassica oleracea HOM05D010376 ORTHO05D006663 2.5e-09 65.1 72 55.6
BraA09t37827Z Brassica rapa HOM05D010376 ORTHO05D006663 2.5e-09 65.1 72 55.6
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 5.7e-09 63.9 69 43.5
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 7.4e-09 63.5 72 47.2
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 7.4e-09 63.5 59 52.5
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 9.7e-09 63.2 59 52.5
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.3e-08 62.8 55 52.7
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 2.8e-08 61.6 59 52.5
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 6.3e-08 60.5 66 50.0
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.2e-08 60.1 60 48.3
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 1.1e-07 59.7 59 49.2
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.1e-07 59.7 74 45.9
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.1e-07 59.7 60 51.7
BraA02t08004Z Brassica rapa HOM05D010376 ORTHO05D006663 2.4e-07 58.5 38 81.6
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.4e-07 58.5 74 47.3
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 3.1e-07 58.2 44 59.1
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 3.1e-07 58.2 73 42.5
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 3.1e-07 58.2 65 44.6
TPR.G4919 Trifolium pratense HOM05D006911 ORTHO05D006663 3.1e-07 58.2 64 48.4
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 4.1e-07 57.8 64 39.1
arahy.Tifrunner.gnm1.ann1.M9VZ51 Arachis hypogaea HOM05D006911 ORTHO05D006663 5.3e-07 57.4 67 43.3
arahy.Tifrunner.gnm1.ann1.A53T08 Arachis hypogaea HOM05D006911 ORTHO05D006663 6.9e-07 57.0 67 43.3
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 6.9e-07 57.0 46 50.0
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-06 56.2 62 48.4
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.2e-06 56.2 62 48.4
Manes.07G101802 Manihot esculenta HOM05D006911 ORTHO05D006663 1.2e-06 56.2 44 54.5
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.5e-06 55.8 74 44.6
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.5e-06 55.8 58 46.6
MD09G1150000 Malus domestica HOM05D006911 ORTHO05D006663 1.5e-06 55.8 41 56.1
SalBow6G3836 Salvia bowleyana HOM05D006911 ORTHO05D006663 1.5e-06 55.8 49 55.1
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.6e-06 55.1 46 50.0
SalBow7G2931 Salvia bowleyana HOM05D006911 ORTHO05D006663 2.6e-06 55.1 49 55.1
Glyma.14G029400 Glycine max HOM05D006911 ORTHO05D006663 3.4e-06 54.7 59 44.1
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.4e-06 54.7 62 46.8
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 3.4e-06 54.7 75 44.0
C09p28390 Brassica napus HOM05D010376 ORTHO05D006663 4.5e-06 54.3 35 82.9
Duzib133G0070 Durio zibethinus HOM05D006911 ORTHO05D006663 4.5e-06 54.3 46 50.0
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 4.5e-06 54.3 41 51.2
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.5e-06 54.3 41 51.2
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 4.5e-06 54.3 41 51.2
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 5.9e-06 53.9 76 47.4
Migut.H01374 Erythranthe guttata HOM05D006911 ORTHO05D006663 5.9e-06 53.9 47 55.3
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 5.9e-06 53.9 60 50.0
RcHm_v2.0_Chr2g0151771 Rosa chinensis HOM05D006911 ORTHO05D006663 5.9e-06 53.9 46 47.8
Migut.M00927 Erythranthe guttata HOM05D006911 ORTHO05D006663 7.7e-06 53.5 68 47.1
MBI10_g27413_MAGBIO Magnolia biondii HOM05D006911 ORTHO05D006663 7.7e-06 53.5 44 50.0


User provided reference genes

Program Settings