Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G46010 Arabidopsis thaliana HOM05D001919 ORTHO05D038741 3.0e-60 235.0 116 100.0
CARHR175930 Cardamine hirsuta HOM05D001919 ORTHO05D038741 6.1e-29 131.0 114 63.2
CARHR175940 Cardamine hirsuta HOM05D001919 ORTHO05D004490 3.8e-15 85.1 92 47.8
Thhalv10001099m.g Eutrema salsugineum HOM05D001919 ORTHO05D004490 5.0e-15 84.7 93 48.4
Sp2g10860 Schrenkiella parvula HOM05D001919 ORTHO05D004490 6.5e-15 84.3 118 46.6
Carub.0008s0194 Capsella rubella HOM05D001919 ORTHO05D004490 8.5e-15 84.0 120 45.8
AL8G12540 Arabidopsis lyrata HOM05D001919 ORTHO05D004490 1.9e-14 82.8 102 47.1
AT5G45980 Arabidopsis thaliana HOM05D001919 ORTHO05D004490 3.2e-14 82.0 118 44.9
C02p46900 Brassica napus HOM05D001919 ORTHO05D004490 4.0e-12 75.1 118 44.1
BolC2t10738H Brassica oleracea HOM05D001919 ORTHO05D004490 4.0e-12 75.1 118 44.1
THA.LOC104798411 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 5.2e-12 74.7 128 42.2
A02p29560 Brassica napus HOM05D001919 ORTHO05D004490 2.0e-11 72.8 117 41.9
BraA02t07981Z Brassica rapa HOM05D001919 ORTHO05D004490 2.0e-11 72.8 117 41.9
CSS0013714 Camellia sinensis var. sinensis HOM05D001919 ORTHO05D004490 5.7e-11 71.2 107 41.1
Zm00001eb429640 Zea mays HOM05D001919 ORTHO05D004490 5.7e-11 71.2 85 42.4
EL10Ac8g20466 Beta vulgaris HOM05D001919 ORTHO05D004490 2.8e-10 68.9 99 40.4
AUR62014909 Chenopodium quinoa HOM05D001919 ORTHO05D004490 2.8e-10 68.9 100 40.0
AUR62031114 Chenopodium quinoa HOM05D001919 ORTHO05D004490 2.8e-10 68.9 100 40.0
Os01g0667400 Oryza sativa ssp. japonica HOM05D001919 ORTHO05D004490 2.8e-10 68.9 82 43.9
MSTRG.7376 Avicennia marina HOM05D001919 ORTHO05D004490 3.7e-10 68.6 83 44.6
Aa31LG9G6920 Aethionema arabicum HOM05D001919 ORTHO05D004490 6.3e-10 67.8 115 38.3
BcaC03g16817 Brassica carinata HOM05D001919 ORTHO05D004490 6.3e-10 67.8 67 47.8
HanXRQChr16g0518541 Helianthus annuus HOM05D001919 ORTHO05D004490 8.3e-10 67.4 85 42.4
DCAR_006582 Daucus carota HOM05D001919 ORTHO05D004490 1.1e-09 67.0 82 41.5
Gohir.A10G029000 Gossypium hirsutum HOM05D001919 ORTHO05D004490 1.1e-09 67.0 97 39.2
ECA234G2613 Erigeron canadensis HOM05D001919 ORTHO05D004490 1.4e-09 66.6 66 47.0
Nitab4.5_0000376g0020 Nicotiana tabacum HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
Peaxi162Scf00042g00077 Petunia axillaris HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
Solyc02g077390.2 Solanum lycopersicum HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
Sopen02g022290 Solanum pennellii HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
PGSC0003DMG400010725 Solanum tuberosum HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
SGA_v2.0_scaffold309G48154 Striga asiatica HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 47.7
Zm00001eb157360 Zea mays HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
Zm00001eb359810 Zea mays HOM05D001919 ORTHO05D004490 1.4e-09 66.6 65 49.2
Nn1g04282 Nelumbo nucifera HOM05D001919 ORTHO05D004490 1.8e-09 66.2 65 49.2
HPP92_023294 Vanilla planifolia HOM05D001919 ORTHO05D004490 1.8e-09 66.2 100 39.0
Cc02_g14220 Coffea canephora HOM05D001919 ORTHO05D004490 2.4e-09 65.9 74 45.9
Lalb_Chr16g0384161 Lupinus albus HOM05D001919 ORTHO05D004490 2.4e-09 65.9 65 47.7
Os05g0564500 Oryza sativa ssp. japonica HOM05D001919 ORTHO05D004490 2.4e-09 65.9 65 47.7
SHI28462 Sapria himalayana HOM05D001919 ORTHO05D004490 2.4e-09 65.9 98 40.8
arahy.Tifrunner.gnm1.ann1.6Y8JYR Arachis hypogaea HOM05D001919 ORTHO05D004490 3.1e-09 65.5 65 47.7
arahy.Tifrunner.gnm1.ann1.BECN34 Arachis hypogaea HOM05D001919 ORTHO05D004490 3.1e-09 65.5 65 47.7
CAN.G79.74 Capsicum annuum HOM05D001919 ORTHO05D004490 3.1e-09 65.5 65 47.7
TPR.G11704 Trifolium pratense HOM05D001919 ORTHO05D004490 3.1e-09 65.5 66 47.0
ATR0602G176 Amborella trichopoda HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
Cpa.g.sc7.12 Carica papaya HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
CiPaw.09G065800 Carya illinoinensis HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
COL.COLO4_31392 Corchorus olitorius HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
Duzib235G1081 Durio zibethinus HOM05D001919 ORTHO05D004490 4.1e-09 65.1 117 37.6
HanXRQChr17g0561751 Helianthus annuus HOM05D001919 ORTHO05D004490 4.1e-09 65.1 66 47.0
Lalb_Chr18g0059291 Lupinus albus HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
Oeu001093.1 Olea europaea HOM05D001919 ORTHO05D004490 4.1e-09 65.1 66 45.5
Potri.004G051600 Populus trichocarpa HOM05D001919 ORTHO05D004490 4.1e-09 65.1 63 47.6
QL05p043708 Quercus lobata HOM05D001919 ORTHO05D004490 4.1e-09 65.1 65 47.7
Sc05g0007320 Simmondsia chinensis HOM05D001919 ORTHO05D004490 4.1e-09 65.1 97 39.2
Actinidia23666 Actinidia chinensis HOM05D001919 ORTHO05D004490 5.4e-09 64.7 101 39.6
THA.LOC104812625 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 5.4e-09 64.7 99 39.4
THA.LOC104814236 Tarenaya hassleriana HOM05D001919 ORTHO05D004490 7.0e-09 64.3 99 41.4
Sabra04G0032400 Salix brachista HOM05D001919 ORTHO05D004490 9.1e-09 63.9 100 40.0
Aqoxy1G02239 Aquilegia oxysepala HOM05D001919 ORTHO05D004490 1.2e-08 63.5 117 38.5
Zm00001eb180280 Zea mays HOM05D001919 ORTHO05D004490 1.6e-08 63.2 65 46.2
FAN21G0880 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.0e-08 62.8 99 37.4
Lsat_1_v5_gn_4_51320 Lactuca sativa HOM05D001919 ORTHO05D004490 2.0e-08 62.8 114 36.0
FvH4_3g10130 Fragaria vesca HOM05D001919 ORTHO05D004490 2.7e-08 62.4 99 36.4
FAN11G0091 Fragaria x ananassa HOM05D001919 ORTHO05D004490 2.7e-08 62.4 99 36.4
FAN21G3850 Fragaria x ananassa HOM05D001919 ORTHO05D004490 3.5e-08 62.0 110 38.2
FAN25G0323 Fragaria x ananassa HOM05D001919 ORTHO05D004490 3.5e-08 62.0 110 38.2
Medtr7g025010 Medicago truncatula HOM05D000388 ORTHO05D004490 3.5e-08 62.0 65 46.2
RcHm_v2.0_Chr5g0009691 Rosa chinensis HOM05D001919 ORTHO05D004490 3.5e-08 62.0 116 37.9
HanXRQChr11g0330491 Helianthus annuus HOM05D001919 ORTHO05D004490 4.5e-08 61.6 108 37.0
Rhsim13G0181900 Rhododendron simsii HOM05D001919 ORTHO05D004490 4.5e-08 61.6 115 37.4
Ca_00405_v3 Cicer arietinum L. HOM05D001919 ORTHO05D004490 5.9e-08 61.2 99 39.4
Glyma.07G203000 Glycine max HOM05D001919 ORTHO05D004490 5.9e-08 61.2 118 37.3
Os07g0533201 Oryza sativa ssp. japonica HOM05D001919 ORTHO05D004490 7.7e-08 60.8 65 47.7
Pp3c15_20000 Physcomitrium patens HOM05D001617 ORTHO05D002495 7.7e-08 60.8 69 43.5
Ciclev10015562m.g Citrus clementina HOM05D001919 ORTHO05D004490 1.0e-07 60.5 118 36.4
FvH4_3g08310 Fragaria vesca HOM05D001919 ORTHO05D004490 1.0e-07 60.5 111 36.9
FAN11G3677 Fragaria x ananassa HOM05D001919 ORTHO05D004490 1.0e-07 60.5 111 36.9
FAN16G3742 Fragaria x ananassa HOM05D001919 ORTHO05D004490 1.0e-07 60.5 111 36.9
Medtr2g015000 Medicago truncatula HOM05D001919 ORTHO05D004490 1.0e-07 60.5 117 37.6
Pp3c9_13640 Physcomitrium patens HOM05D001617 ORTHO05D002495 1.0e-07 60.5 66 43.9
Migut.M01086 Erythranthe guttata HOM05D001919 ORTHO05D004490 1.3e-07 60.1 100 35.0
FAN25G1426 Fragaria x ananassa HOM05D001919 ORTHO05D004490 1.3e-07 60.1 99 36.4
Gohir.D10G029500 Gossypium hirsutum HOM05D001919 ORTHO05D004490 1.3e-07 60.1 117 35.0
Gorai.011G031300 Gossypium raimondii HOM05D001919 ORTHO05D004490 1.3e-07 60.1 117 35.0
MD10G1286500 Malus domestica HOM05D001919 ORTHO05D004490 1.3e-07 60.1 115 38.3
Manes.17G051300 Manihot esculenta HOM05D001919 ORTHO05D004490 1.3e-07 60.1 121 38.0
Gorai.009G165700 Gossypium raimondii HOM05D001919 ORTHO05D004490 1.7e-07 59.7 117 37.6
Manes.16G034000 Manihot esculenta HOM05D001919 ORTHO05D004490 1.7e-07 59.7 113 36.3
Atru.chr10.1753 Acer truncatum HOM05D001919 ORTHO05D004490 2.3e-07 59.3 124 35.5
Hma1.2p1_0155F.1_g068620 Hydrangea macrophylla HOM05D001919 ORTHO05D004490 2.3e-07 59.3 119 36.1
Psat1g201160 Pisum sativum HOM05D001919 ORTHO05D004490 2.3e-07 59.3 120 37.5
CsaV3_6G050540 Cucumis sativus L. HOM05D001919 ORTHO05D004490 2.9e-07 58.9 124 37.1
Gohir.D05G160500 Gossypium hirsutum HOM05D001919 ORTHO05D004490 2.9e-07 58.9 118 38.1
MD05G1307400 Malus domestica HOM05D001919 ORTHO05D004490 2.9e-07 58.9 116 37.1
Psat7g117160 Pisum sativum HOM05D001919 ORTHO05D004490 2.9e-07 58.9 118 36.4
Sp4g16310 Schrenkiella parvula HOM05D001919 ORTHO05D004490 2.9e-07 58.9 122 37.7
arahy.Tifrunner.gnm1.ann1.PM2MNG Arachis hypogaea HOM05D001919 ORTHO05D004490 3.8e-07 58.5 120 35.0
BcaB02g10604 Brassica carinata HOM05D001919 ORTHO05D004490 3.8e-07 58.5 118 35.6
A05p11670 Brassica napus HOM05D001919 ORTHO05D004490 3.8e-07 58.5 118 35.6
BraA05t20114Z Brassica rapa HOM05D001919 ORTHO05D004490 3.8e-07 58.5 118 35.6
Eucgr.D00577 Eucalyptus grandis HOM05D001919 ORTHO05D004490 3.8e-07 58.5 121 37.2
Gohir.A05G157800 Gossypium hirsutum HOM05D001919 ORTHO05D004490 3.8e-07 58.5 118 38.1
Nn1g06358 Nelumbo nucifera HOM05D001919 ORTHO05D004490 3.8e-07 58.5 123 38.2
PSO541G2659 Papaver somniferum HOM05D001919 ORTHO05D004490 3.8e-07 58.5 122 37.7
SEGI_21669 Sequoiadendron giganteum HOM05D001919 ORTHO05D004490 3.8e-07 58.5 60 46.7
TWI38G2016 Tripterygium wilfordii HOM05D001919 ORTHO05D004490 3.8e-07 58.5 112 36.6
TAR629G3060 Trochodendron aralioides HOM05D001919 ORTHO05D004490 3.8e-07 58.5 120 38.3
arahy.Tifrunner.gnm1.ann1.KEU6X6 Arachis hypogaea HOM05D001919 ORTHO05D004490 5.0e-07 58.2 120 35.0
C03p22100 Brassica napus HOM05D001919 ORTHO05D004490 5.0e-07 58.2 118 37.3
BolC3t14594H Brassica oleracea HOM05D001919 ORTHO05D004490 5.0e-07 58.2 118 37.3
Lj6g0021226 Lotus japonicus HOM05D001919 ORTHO05D004490 5.0e-07 58.2 124 37.1
PSO675G4366 Papaver somniferum HOM05D001919 ORTHO05D004490 5.0e-07 58.2 122 37.7
Sabra11G0041800 Salix brachista HOM05D001919 ORTHO05D004490 5.0e-07 58.2 120 40.0
Sabra11G0043400 Salix brachista HOM05D001919 ORTHO05D004490 5.0e-07 58.2 120 40.0
Aa31LG9G13800 Aethionema arabicum HOM05D001919 ORTHO05D004490 6.6e-07 57.8 114 37.7
Duzib192G1052 Durio zibethinus HOM05D001919 ORTHO05D004490 6.6e-07 57.8 119 37.0
Glyma.10G069700 Glycine max HOM05D001919 ORTHO05D004490 8.6e-07 57.4 117 35.0
Lalb_Chr09g0327921 Lupinus albus HOM05D001919 ORTHO05D004490 8.6e-07 57.4 115 36.5
Potri.011G061400 Populus trichocarpa HOM05D001919 ORTHO05D004490 8.6e-07 57.4 120 40.0
Prupe.4G055300 Prunus persica HOM05D001919 ORTHO05D004490 8.6e-07 57.4 116 36.2
AL4G29710 Arabidopsis lyrata HOM05D001919 ORTHO05D004490 1.1e-06 57.0 122 36.9
AT2G33880 Arabidopsis thaliana HOM05D001919 ORTHO05D004490 1.1e-06 57.0 122 36.9
BcaC02g11466 Brassica carinata HOM05D001919 ORTHO05D004490 1.1e-06 57.0 118 34.7
C04p15130 Brassica napus HOM05D001919 ORTHO05D004490 1.1e-06 57.0 118 34.7
BolC4t23089H Brassica oleracea HOM05D001919 ORTHO05D004490 1.1e-06 57.0 118 34.7
Carub.0004s1559 Capsella rubella HOM05D001919 ORTHO05D004490 1.1e-06 57.0 122 36.9
Cfa000549 Carpinus fangiana HOM05D000064 ORTHO05D000281 1.1e-06 57.0 120 35.0
ClCG01G023420 Citrullus lanatus HOM05D001919 ORTHO05D004490 1.1e-06 57.0 123 37.4
Lj4g0025099 Lotus japonicus HOM05D001919 ORTHO05D004490 1.1e-06 57.0 113 34.5
PGR042G0754 Punica granatum HOM05D001919 ORTHO05D004490 1.1e-06 57.0 114 36.0
SEGI_09303 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 1.1e-06 57.0 60 45.0
AUR62002048 Chenopodium quinoa HOM05D001617 ORTHO05D002495 1.5e-06 56.6 63 42.9
AUR62003747 Chenopodium quinoa HOM05D001617 ORTHO05D002495 1.5e-06 56.6 63 42.9
MELO3C007244.2 Cucumis melo HOM05D001919 ORTHO05D004490 1.5e-06 56.6 124 36.3
Glyma.13G172700 Glycine max HOM05D001919 ORTHO05D004490 1.5e-06 56.6 113 34.5
Thecc.06G178000 Theobroma cacao HOM05D001919 ORTHO05D004490 1.5e-06 56.6 119 36.1
Ciclev10026199m.g Citrus clementina HOM05D001617 ORTHO05D002495 1.9e-06 56.2 63 41.3
Duzib160G0055 Durio zibethinus HOM05D001919 ORTHO05D004490 1.9e-06 56.2 108 38.9
Sed0015574 Sechium edule HOM05D001919 ORTHO05D004490 1.9e-06 56.2 123 36.6
CANSAT35G1097 Cannabis sativa HOM05D001919 ORTHO05D004490 2.5e-06 55.8 119 36.1
CiPaw.10G054300 Carya illinoinensis HOM05D001919 ORTHO05D004490 2.5e-06 55.8 117 35.0
TAR626G1914 Trochodendron aralioides HOM05D001919 ORTHO05D004490 2.5e-06 55.8 119 36.1
Glyma.13G152644 Glycine max HOM05D001919 ORTHO05D004490 3.3e-06 55.5 118 35.6
SEGI_17071 Sequoiadendron giganteum HOM05D001919 ORTHO05D004490 3.3e-06 55.5 65 40.0
SEGI_32698 Sequoiadendron giganteum HOM05D001919 ORTHO05D004490 3.3e-06 55.5 63 39.7
Peaxi162Scf00966g00411 Petunia axillaris HOM05D001919 ORTHO05D004490 4.2e-06 55.1 109 34.9
Phvul.003G073400 Phaseolus vulgaris HOM05D001919 ORTHO05D004490 4.2e-06 55.1 118 36.4
TPR.G27874 Trifolium pratense HOM05D001919 ORTHO05D004490 4.2e-06 55.1 69 40.6
VMungo0540G0605 Vigna mungo HOM05D001919 ORTHO05D004490 4.2e-06 55.1 119 36.1
HPP92_007110 Vanilla planifolia HOM05D001617 ORTHO05D002495 7.2e-06 54.3 63 41.3


User provided reference genes

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