Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G45850 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 1.1e-243 846.3 446 100.0
AL8G12720 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 2.4e-198 695.7 448 83.9
Carub.0008s0211 Capsella rubella HOM05D009484 ORTHO05D011605 3.8e-164 582.0 446 72.0
CARHR176120 Cardamine hirsuta HOM05D009484 ORTHO05D011605 1.7e-143 513.5 445 68.1
Sp2g10770 Schrenkiella parvula HOM05D009484 ORTHO05D011605 8.3e-143 511.1 456 67.3
BraA02t07967Z Brassica rapa HOM05D009484 ORTHO05D011605 1.4e-129 467.2 453 62.5
A02p29400 Brassica napus HOM05D009484 ORTHO05D011605 2.0e-128 463.4 453 62.0
BcaB07g30428 Brassica carinata HOM05D009484 ORTHO05D011605 1.6e-125 453.8 440 62.0
BolC2t10719H Brassica oleracea HOM05D009484 ORTHO05D011605 4.3e-123 445.7 453 60.7
C02p46640 Brassica napus HOM05D009484 ORTHO05D011605 3.6e-122 442.6 453 60.5
BcaC03g16792 Brassica carinata HOM05D009484 ORTHO05D011605 1.6e-117 427.2 441 60.5
Thhalv10000904m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 2.7e-117 426.4 353 69.7
THA.LOC104798428 Tarenaya hassleriana HOM05D009484 ORTHO05D011605 4.7e-53 213.0 544 37.3
CARHR225490 Cardamine hirsuta HOM05D009484 ORTHO05D011605 2.6e-51 207.2 509 38.1
Sp7g15390 Schrenkiella parvula HOM05D009484 ORTHO05D011605 2.2e-50 204.1 506 36.2
C07p49890 Brassica napus HOM05D009484 ORTHO05D011605 3.1e-49 200.3 487 37.6
BolC7t45490H Brassica oleracea HOM05D009484 ORTHO05D011605 3.1e-49 200.3 487 37.6
AT4G18630 Arabidopsis thaliana HOM05D009484 ORTHO05D011605 9.1e-49 198.7 510 37.6
BolC1t01236H Brassica oleracea HOM05D009484 ORTHO05D011605 3.5e-48 196.8 503 37.0
C01p12590 Brassica napus HOM05D009484 ORTHO05D011605 1.0e-47 195.3 506 37.0
A03p51460 Brassica napus HOM05D009484 ORTHO05D011605 2.9e-47 193.7 479 37.4
BraA03t14229Z Brassica rapa HOM05D009484 ORTHO05D011605 2.9e-47 193.7 479 37.4
BraA01t01013Z Brassica rapa HOM05D009484 ORTHO05D011605 5.0e-47 193.0 507 36.3
AL7G35630 Arabidopsis lyrata HOM05D009484 ORTHO05D011605 6.6e-47 192.6 505 37.0
Carub.0007s2259 Capsella rubella HOM05D009484 ORTHO05D011605 2.5e-46 190.7 511 38.0
A01p10670 Brassica napus HOM05D009484 ORTHO05D011605 7.2e-46 189.1 508 36.8
BcaNung02666 Brassica carinata HOM05D009484 ORTHO05D011605 8.0e-45 185.7 491 36.5
Thhalv10025107m.g Eutrema salsugineum HOM05D009484 ORTHO05D011605 2.9e-42 177.2 499 35.7
Aa31LG9G7210 Aethionema arabicum HOM05D009484 ORTHO05D011605 1.3e-34 151.8 225 45.3
Aa31LG6G1380 Aethionema arabicum HOM05D009484 ORTHO05D011605 1.5e-19 101.7 324 32.1
Medtr4g065073 Medicago truncatula HOM05D002063 ORTHO05D002075 3.7e-18 97.1 562 28.5
Medtr8g086460 Medicago truncatula HOM05D002063 ORTHO05D002075 3.7e-18 97.1 562 28.5
BcaB03g12147 Brassica carinata HOM05D002063 ORTHO05D002075 8.4e-18 95.9 545 26.1
BraA07t28875Z Brassica rapa HOM05D002063 ORTHO05D002075 1.6e-16 91.7 525 25.9
BcaB03g13896 Brassica carinata HOM05D002063 ORTHO05D002075 3.5e-16 90.5 529 27.2
A08p25230 Brassica napus HOM05D002063 ORTHO05D002075 7.8e-16 89.4 538 26.2
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 1.0e-15 89.0 533 26.5
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 1.0e-15 89.0 533 26.5
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 8.6e-15 85.9 587 25.0
AT1G29240 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 1.1e-14 85.5 605 26.9
C07p16460 Brassica napus HOM05D002063 ORTHO05D002075 2.5e-14 84.3 528 25.4
A07p10850 Brassica napus HOM05D002063 ORTHO05D002075 5.6e-14 83.2 504 25.2
BraA08t34475Z Brassica rapa HOM05D002063 ORTHO05D002075 7.3e-14 82.8 550 25.6
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 9.6e-14 82.4 534 25.3
CANSAT54G0797 Cannabis sativa HOM05D002063 ORTHO05D002075 1.2e-13 82.0 610 24.9
ECA234G1478 Erigeron canadensis HOM05D002063 ORTHO05D002075 1.6e-13 81.6 536 25.4
TPR.G6806 Trifolium pratense HOM05D002063 ORTHO05D002075 2.1e-13 81.3 559 23.3
BcaC06g35413 Brassica carinata HOM05D002063 ORTHO05D002075 6.2e-13 79.7 528 25.0
Hund21171 Selenicereus undatus HOM05D002063 ORTHO05D002075 1.1e-12 79.0 479 26.5
CARHR028530 Cardamine hirsuta HOM05D002063 ORTHO05D002075 4.0e-12 77.0 567 25.0
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 8.9e-12 75.9 78 61.5
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 8.9e-12 75.9 78 61.5
HanXRQChr17g0561721 Helianthus annuus HOM05D002063 ORTHO05D002075 8.9e-12 75.9 533 24.4
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 1.5e-11 75.1 78 55.1
Manes.17G056500 Manihot esculenta HOM05D002063 ORTHO05D002075 2.0e-11 74.7 373 29.0
Cc05_g08420 Coffea canephora HOM05D002063 ORTHO05D002075 3.4e-11 73.9 81 46.9
CSS0018909 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 4.4e-11 73.6 566 26.5
Lsat_1_v5_gn_4_49001 Lactuca sativa HOM05D002063 ORTHO05D002075 4.4e-11 73.6 505 24.6
Carub.0001s2741 Capsella rubella HOM05D002063 ORTHO05D002075 5.8e-11 73.2 611 25.2
Ca_17915_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 5.8e-11 73.2 405 25.9
Gohir.D05G157400 Gossypium hirsutum HOM05D002063 ORTHO05D002075 9.9e-11 72.4 85 49.4
Gorai.009G161900 Gossypium raimondii HOM05D002063 ORTHO05D002075 9.9e-11 72.4 85 49.4
BolC7t42142H Brassica oleracea HOM05D002063 ORTHO05D002075 1.3e-10 72.0 544 24.1
FvH4_3g07680 Fragaria vesca HOM05D002063 ORTHO05D002075 1.3e-10 72.0 86 53.5
FAN16G0090 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.3e-10 72.0 86 51.2
Nitab4.5_0000605g0110 Nicotiana tabacum HOM05D002063 ORTHO05D002075 1.3e-10 72.0 170 34.7
PGSC0003DMG400020440 Solanum tuberosum HOM05D002063 ORTHO05D002075 1.3e-10 72.0 608 23.2
EL10Ac8g20589 Beta vulgaris HOM05D002063 ORTHO05D002075 1.7e-10 71.6 679 23.6
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 1.7e-10 71.6 106 44.3
CSS0048552 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 2.9e-10 70.9 557 26.2
Duzib192G1071 Durio zibethinus HOM05D002063 ORTHO05D002075 2.9e-10 70.9 103 44.7
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 4.9e-10 70.1 529 24.6
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 4.9e-10 70.1 124 44.4
Nitab4.5_0006324g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 6.4e-10 69.7 198 32.8
Migut.M01031 Erythranthe guttata HOM05D002063 ORTHO05D002075 8.4e-10 69.3 596 25.0
AL1G42960 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 1.4e-09 68.6 603 25.2
FAN11G1180 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.4e-09 68.6 74 55.4
MD09G1236600 Malus domestica HOM05D002063 ORTHO05D002075 2.4e-09 67.8 81 50.6
Psat1g197800 Pisum sativum HOM05D002063 ORTHO05D002075 2.4e-09 67.8 118 40.7
PGSC0003DMG400010231 Solanum tuberosum HOM05D002063 ORTHO05D002075 2.4e-09 67.8 169 32.0
GSVIVG01020715001 Vitis vinifera HOM05D002063 ORTHO05D002075 2.4e-09 67.8 81 49.4
FAN25G1222 Fragaria x ananassa HOM05D002063 ORTHO05D002075 3.2e-09 67.4 128 38.3
Sopen07g027090 Solanum pennellii HOM05D002063 ORTHO05D002075 3.2e-09 67.4 609 23.0
ClCG03G007640 Citrullus lanatus HOM05D002063 ORTHO05D002075 4.2e-09 67.0 82 48.8
Hund09960 Selenicereus undatus HOM05D002063 ORTHO05D002075 4.2e-09 67.0 459 26.4
Psat7g070160 Pisum sativum HOM05D002063 ORTHO05D002075 5.4e-09 66.6 557 26.6
Prupe.3G117500 Prunus persica HOM05D002063 ORTHO05D002075 5.4e-09 66.6 81 49.4
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 5.4e-09 66.6 370 25.7
Thhalv10007223m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 7.1e-09 66.2 586 25.4
MD17G1266300 Malus domestica HOM05D002063 ORTHO05D002075 7.1e-09 66.2 81 50.6
TAR624G0717 Trochodendron aralioides HOM05D002063 ORTHO05D002075 9.3e-09 65.9 191 31.9
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 1.2e-08 65.5 715 24.2
HanXRQChr16g0518671 Helianthus annuus HOM05D002063 ORTHO05D002075 1.2e-08 65.5 542 24.0
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 1.2e-08 65.5 77 51.9
CAN.G1081.10 Capsicum annuum HOM05D002063 ORTHO05D002075 1.6e-08 65.1 628 23.4
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 1.6e-08 65.1 709 24.0
Dinv16781 Davidia involucrata HOM05D002063 ORTHO05D002075 1.6e-08 65.1 96 44.8
Aa31LG9G13950 Aethionema arabicum HOM05D002063 ORTHO05D002075 2.1e-08 64.7 552 25.4
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 2.1e-08 64.7 684 23.5
AT2G34170 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 2.7e-08 64.3 189 36.5
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 2.7e-08 64.3 170 32.9
CsaV3_1G033290 Cucumis sativus L. HOM05D002063 ORTHO05D001117 2.7e-08 64.3 82 47.6
RcHm_v2.0_Chr5g0010991 Rosa chinensis HOM05D002063 ORTHO05D002075 2.7e-08 64.3 215 29.8
Sopen02g021610 Solanum pennellii HOM05D002063 ORTHO05D002075 2.7e-08 64.3 169 32.0
Peaxi162Scf00469g00410 Petunia axillaris HOM05D002063 ORTHO05D002075 3.5e-08 63.9 109 38.5
CiPaw.03G194900 Carya illinoinensis HOM05D002063 ORTHO05D002075 4.6e-08 63.5 81 44.4
FAN21G3171 Fragaria x ananassa HOM05D002063 ORTHO05D002075 4.6e-08 63.5 95 43.2
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 4.6e-08 63.5 184 33.2
AUR62027692 Chenopodium quinoa HOM05D002063 ORTHO05D002075 6.0e-08 63.2 489 23.9
TWI60G0150 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 6.0e-08 63.2 195 32.3
CAN.G370.91 Capsicum annuum HOM05D002063 ORTHO05D002075 7.8e-08 62.8 167 32.3
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 7.8e-08 62.8 604 25.3
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 1.0e-07 62.4 369 26.0
Aa31LG5G5900 Aethionema arabicum HOM05D002063 ORTHO05D002075 1.3e-07 62.0 580 23.4
CARHR128260 Cardamine hirsuta HOM05D002063 ORTHO05D002075 1.3e-07 62.0 93 45.2
MD05G1299600 Malus domestica HOM05D002063 ORTHO05D002075 1.7e-07 61.6 317 26.2
Medtr2g016190 Medicago truncatula HOM05D002063 ORTHO05D002075 1.7e-07 61.6 82 47.6
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 1.7e-07 61.6 74 48.6
Aa31LG6G6300 Aethionema arabicum HOM05D002063 ORTHO05D002075 2.3e-07 61.2 192 32.8
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 3.0e-07 60.8 81 44.4
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 3.0e-07 60.8 82 45.1
AL4G30070 Arabidopsis lyrata HOM05D002063 ORTHO05D002075 3.9e-07 60.5 185 30.8
CiPaw.10G059700 Carya illinoinensis HOM05D002063 ORTHO05D002075 5.1e-07 60.1 197 29.4
Ca_00441_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 5.1e-07 60.1 170 34.1
Hma1.2p1_0333F.1_g128110 Hydrangea macrophylla HOM05D002063 ORTHO05D002075 5.1e-07 60.1 74 50.0
arahy.Tifrunner.gnm1.ann1.67CBH9 Arachis hypogaea HOM05D002063 ORTHO05D002075 6.6e-07 59.7 543 23.2
Carub.0004s1580 Capsella rubella HOM05D002063 ORTHO05D002075 6.6e-07 59.7 190 33.2
vmacro16062 Vaccinium macrocarpon HOM05D002063 ORTHO05D002075 6.6e-07 59.7 79 45.6
arahy.Tifrunner.gnm1.ann1.V8BLVD Arachis hypogaea HOM05D002063 ORTHO05D002075 8.7e-07 59.3 74 48.6
Cfa000617 Carpinus fangiana HOM05D002063 ORTHO05D002075 8.7e-07 59.3 96 42.7
PSO229G0031 Papaver somniferum HOM05D002063 ORTHO05D002075 8.7e-07 59.3 163 35.0
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 1.1e-06 58.9 331 24.5
PSO675G5163 Papaver somniferum HOM05D002063 ORTHO05D002075 1.1e-06 58.9 163 35.0
Peaxi162Scf00940g00038 Petunia axillaris HOM05D002063 ORTHO05D002075 1.1e-06 58.9 170 28.8
Rhsim02G0143400 Rhododendron simsii HOM05D002063 ORTHO05D002075 1.1e-06 58.9 82 43.9
arahy.Tifrunner.gnm1.ann1.BM19ED Arachis hypogaea HOM05D002063 ORTHO05D002075 1.5e-06 58.5 166 30.1
CiPaw.04G133300 Carya illinoinensis HOM05D002063 ORTHO05D002075 1.5e-06 58.5 87 41.4
TPR.G11764 Trifolium pratense HOM05D002063 ORTHO05D002075 1.5e-06 58.5 123 39.8
A05p11510 Brassica napus HOM05D002063 ORTHO05D002075 1.9e-06 58.2 185 33.0
RcHm_v2.0_Chr2g0129801 Rosa chinensis HOM05D002063 ORTHO05D002075 1.9e-06 58.2 81 43.2
Sabra11G0048600 Salix brachista HOM05D002063 ORTHO05D002075 2.5e-06 57.8 100 41.0
Ah.14g087080 Amaranthus hybridus HOM05D002063 ORTHO05D002075 3.3e-06 57.4 482 24.9
CSS0017486 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 3.3e-06 57.4 74 44.6
Glyma.15G083500 Glycine max HOM05D002063 ORTHO05D002075 3.3e-06 57.4 379 25.6
BraA05t20098Z Brassica rapa HOM05D002063 ORTHO05D002075 4.3e-06 57.0 191 32.5
Potri.014G142800 Populus trichocarpa HOM05D002063 ORTHO05D002075 4.3e-06 57.0 81 42.0
RcHm_v2.0_Chr2g0129871 Rosa chinensis HOM05D002063 ORTHO05D002075 4.3e-06 57.0 96 39.6
Haze_06218 Corylus avellana HOM05D002063 ORTHO05D002075 5.6e-06 56.6 321 29.0
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 5.6e-06 56.6 227 29.1
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 5.6e-06 56.6 126 39.7
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 5.6e-06 56.6 114 39.5
PGR042G2756 Punica granatum HOM05D002063 ORTHO05D002075 5.6e-06 56.6 205 30.7
AUR62031220 Chenopodium quinoa HOM05D002063 ORTHO05D002075 7.3e-06 56.2 505 22.8
Dinv05584 Davidia involucrata HOM05D002063 ORTHO05D002075 7.3e-06 56.2 74 44.6
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 7.3e-06 56.2 660 23.0
FvH4_6g27510 Fragaria vesca HOM05D002063 ORTHO05D002075 7.3e-06 56.2 96 38.5
FAN02G3018 Fragaria x ananassa HOM05D002063 ORTHO05D002075 7.3e-06 56.2 454 23.6
Sabra14G0107900 Salix brachista HOM05D002063 ORTHO05D002075 7.3e-06 56.2 81 42.0
Solyc02g076680.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 7.3e-06 56.2 169 30.8


User provided reference genes

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