Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.8e-147 526.6 426 100.0
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.2e-124 449.9 429 88.3
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.1e-99 367.9 407 84.0
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.7e-66 256.9 397 68.5
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 3.5e-66 256.5 397 69.3
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.5e-64 251.1 401 68.3
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.4e-64 248.8 401 68.1
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-62 245.0 400 66.2
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-62 243.4 400 67.0
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.1e-62 243.4 400 67.0
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.1e-62 243.4 400 67.0
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 5.3e-62 242.7 400 67.0
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 5.3e-62 242.7 400 67.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 2.0e-61 240.7 399 66.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 8.4e-60 235.3 420 62.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.9e-59 234.2 400 67.5
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.2e-59 233.0 424 60.8
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 7.1e-59 232.3 394 66.2
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 7.1e-59 232.3 394 66.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 4.6e-58 229.6 394 65.7
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.1e-57 226.1 382 68.8
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.5e-56 224.6 398 66.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 4.3e-56 223.0 405 66.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 4.3e-56 223.0 405 66.7
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.7e-56 222.6 395 66.8
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 5.7e-56 222.6 420 63.1
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 6.2e-55 219.2 398 67.6
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.1e-51 208.4 394 66.2
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.9e-48 197.6 199 63.3
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.1e-46 190.3 193 64.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.4e-43 181.4 404 59.2
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-43 181.0 403 59.6
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 4.2e-43 179.9 399 58.6
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.2e-43 179.1 417 59.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 7.9e-42 175.6 403 59.8
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.0e-41 175.3 417 58.8
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-41 174.9 398 58.5
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 6.7e-41 172.6 398 56.5
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.1e-40 171.8 397 59.9
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-40 171.0 403 58.6
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.0e-40 171.0 409 57.9
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.0e-40 171.0 397 60.2
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 9.7e-40 168.7 397 56.4
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.4e-38 164.1 408 56.9
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.4e-38 164.1 398 59.3
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 5.3e-38 162.9 400 55.0
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 5.3e-38 162.9 398 56.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 6.9e-38 162.5 404 56.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.2e-37 161.8 399 54.9
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.5e-37 161.4 398 54.8
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-37 161.4 405 56.8
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.4e-37 160.2 400 56.8
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 5.9e-37 159.5 402 54.2
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.9e-37 159.5 397 58.4
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.7e-37 159.1 399 55.1
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.0e-36 158.7 399 55.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.0e-36 158.7 358 61.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.3e-36 158.3 399 59.6
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.3e-36 158.3 396 59.1
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.9e-36 157.1 405 55.1
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.8e-36 156.8 397 58.2
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 5.0e-36 156.4 398 54.5
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 8.5e-36 155.6 407 55.8
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 8.5e-36 155.6 399 55.6
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.5e-35 154.1 404 56.7
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.5e-35 154.1 404 57.7
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.2e-35 153.7 395 58.5
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.2e-35 153.3 397 59.4
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 5.5e-35 152.9 402 53.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 5.5e-35 152.9 403 53.8
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 9.4e-35 152.1 403 55.8
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 9.4e-35 152.1 409 55.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 9.4e-35 152.1 405 54.1
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.2e-34 151.8 399 53.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.6e-34 151.4 398 55.8
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.6e-34 151.4 398 56.0
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.6e-34 151.4 395 58.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.1e-34 151.0 398 55.0
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.1e-34 151.0 398 55.0
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 2.1e-34 151.0 402 56.5
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.1e-34 151.0 399 56.4
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 2.1e-34 151.0 399 57.1
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.9e-34 149.1 398 55.3
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.0e-33 148.7 399 54.1
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.0e-33 148.7 400 54.2
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.3e-33 147.5 426 55.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.3e-33 147.5 402 52.0
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.3e-33 147.5 405 55.3
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.0e-33 147.1 399 53.1
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 3.0e-33 147.1 403 58.6
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 3.0e-33 147.1 405 52.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 3.9e-33 146.7 340 62.9
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 5.1e-33 146.4 397 57.7
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 6.7e-33 146.0 379 58.6
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 6.7e-33 146.0 423 52.5
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 8.8e-33 145.6 353 58.6
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 8.8e-33 145.6 398 54.3
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 8.8e-33 145.6 398 56.3
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 8.8e-33 145.6 405 54.6
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.1e-32 145.2 405 54.1
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.1e-32 145.2 403 56.3
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.1e-32 145.2 399 56.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.5e-32 144.8 402 50.7
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.5e-32 144.8 402 53.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.6e-32 144.1 403 56.3
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 3.3e-32 143.7 396 55.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.4e-32 143.3 404 53.7
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 5.7e-32 142.9 337 61.1
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.7e-31 141.4 406 53.4
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.8e-31 140.6 189 48.7
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 3.7e-31 140.2 400 55.0
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-30 138.7 400 54.5
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.8e-30 137.9 405 52.1
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.4e-30 137.5 330 57.9
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 5.3e-30 136.3 364 54.9
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.2e-29 135.2 335 56.1
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.5e-29 134.8 404 55.0
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.0e-29 134.4 393 53.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.5e-29 133.7 404 52.7
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 4.5e-29 133.3 400 50.8
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.7e-29 132.5 337 57.6
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.0e-28 132.1 400 56.0
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.3e-28 131.7 405 50.1
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.7e-28 131.3 405 52.1
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.7e-28 131.3 405 49.6
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 5.0e-28 129.8 399 50.9
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 2.5e-27 127.5 402 50.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.2e-27 126.7 328 57.6
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.2e-27 125.9 195 44.6
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 9.4e-27 125.6 399 50.6
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.2e-26 125.2 399 50.4
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 2.7e-26 124.0 352 55.4
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 6.1e-26 122.9 399 51.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 2.3e-25 120.9 338 57.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 3.9e-25 120.2 340 58.8
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.5e-24 118.2 406 50.2
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 2.0e-24 117.9 399 52.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 4.1e-22 110.2 398 52.5
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.7e-18 97.4 396 48.5
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 6.1e-18 96.3 280 60.4
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 8.0e-18 95.9 164 51.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.4e-17 95.1 407 48.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 3.0e-17 94.0 300 59.0
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 2.0e-16 91.3 343 49.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 2.0e-16 91.3 289 60.2
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.5e-16 89.4 204 35.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.8e-16 89.0 192 34.9
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 4.8e-15 86.7 335 53.4
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 8.3e-15 85.9 178 36.5
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 4.1e-14 83.6 347 45.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.0e-13 81.3 197 35.5
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.1e-11 75.5 136 41.9
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 2.5e-11 74.3 138 41.3
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 4.2e-11 73.6 264 59.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 7.2e-11 72.8 253 66.4
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 7.2e-11 72.8 283 58.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 9.4e-11 72.4 385 31.2
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.8e-09 65.9 45 71.1
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.8e-09 65.9 45 71.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.5e-08 65.1 399 28.1
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 4.4e-08 63.5 162 30.9
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 1.1e-06 58.9 108 36.1
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.1e-06 58.9 256 54.7
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.1e-06 58.9 104 38.5
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.4e-06 58.5 98 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 5.4e-06 56.6 195 30.3
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.4e-06 56.6 98 37.8


User provided reference genes

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