Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1374.0 705 100.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1295.4 707 93.4
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1281.9 704 92.5
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1278.5 706 92.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1278.1 706 92.1
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1276.5 706 92.1
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1274.6 703 92.2
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1274.2 706 91.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1270.4 706 91.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1266.9 704 91.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 0.0e+00 1265.4 704 92.9
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1250.7 704 89.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1244.6 704 90.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1226.8 703 88.8
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1224.5 703 88.5
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 703 88.5
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 703 88.5
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 703 88.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1204.5 702 87.7
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1124.0 699 79.5
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 697 78.9
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1117.4 701 80.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 704 79.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 701 78.7
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 701 78.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 701 80.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 702 79.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1111.3 700 78.7
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1110.9 701 79.2
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1108.2 701 77.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 699 78.5
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1107.0 701 80.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1105.9 702 79.2
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1105.5 702 78.8
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 702 78.6
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 702 78.3
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 702 78.3
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 704 78.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 702 78.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 702 77.8
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1100.9 704 78.0
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 702 78.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 702 78.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 697 78.3
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1097.8 702 77.5
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1097.4 703 78.0
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1096.6 697 78.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1096.6 701 78.6
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 709 77.2
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 700 78.0
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1093.6 704 78.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1091.3 703 77.0
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 702 77.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 703 77.4
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1089.3 701 77.7
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 702 77.8
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 701 77.9
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1087.8 701 78.3
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1081.2 704 77.1
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1081.2 700 77.7
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 702 77.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 698 76.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1079.3 700 77.0
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 702 77.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 700 76.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 4.8e-312 1074.7 700 76.6
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.8e-312 1073.9 700 76.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 4.8e-312 1073.9 694 78.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 4.8e-312 1073.5 700 76.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 9.6e-312 1073.2 728 74.3
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 688 77.9
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.9e-309 1063.5 701 75.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.5e-308 1062.4 699 76.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.1e-306 1056.2 698 74.8
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.1e-306 1056.2 700 74.3
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.4e-306 1055.0 698 75.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.4e-306 1055.0 698 75.9
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.5e-303 1045.0 697 75.2
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.2e-302 1040.4 702 75.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 691 77.0
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 701 75.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 703 75.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 5.8e-300 1033.9 688 75.7
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.2e-299 1031.9 707 75.2
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 704 75.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 9.3e-298 1026.5 698 75.6
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.3e-295 1018.1 679 76.4
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 4.1e-293 1011.1 698 74.1
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 6.9e-293 1010.4 705 72.8
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.5e-292 1007.7 696 73.7
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.2e-290 1001.1 731 71.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.5e-290 1000.7 722 72.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.5e-287 992.6 658 76.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.7e-287 990.7 706 71.2
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.3e-286 989.6 617 80.4
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 8.2e-286 986.9 659 75.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.8e-285 985.7 697 70.7
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.2e-284 983.0 617 79.4
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 7.9e-281 970.3 694 73.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.8e-280 969.1 670 74.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.7e-278 961.4 665 73.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 3.4e-276 954.9 700 70.9
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.6e-268 929.5 588 79.4
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 5.5e-266 921.0 704 68.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.7e-265 918.7 699 67.0
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 6.1e-257 891.0 546 81.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.8e-256 887.1 729 65.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.7e-254 882.9 571 78.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.3e-246 856.7 703 64.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 4.0e-240 835.1 703 64.3
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.9e-234 816.2 725 62.1
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.4e-231 805.1 537 76.9
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.4e-230 801.2 573 69.5
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.0e-223 779.6 527 73.2
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 8.1e-217 757.7 450 85.3
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 3.6e-209 732.3 696 54.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.8e-201 706.1 630 56.8
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 2.6e-191 672.9 613 60.8
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.1e-184 651.0 402 82.1
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.5e-183 645.6 552 63.9
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-182 643.3 392 82.7
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.0e-174 615.5 650 49.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.4e-167 592.8 661 47.2
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.6e-164 582.4 660 47.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.4e-157 560.8 522 59.4
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-146 524.2 395 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.5e-142 508.4 628 44.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-141 506.9 632 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.0e-136 488.8 642 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.6e-132 477.6 629 43.9
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 7.8e-119 432.2 710 38.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.4e-115 421.4 308 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.5e-106 391.3 399 52.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.4e-104 384.0 248 80.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.3e-93 347.1 399 51.6
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.6e-77 293.1 215 63.7
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.6e-69 266.5 224 65.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 7.2e-56 223.0 124 88.7
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-51 209.1 171 66.7
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.7e-36 157.5 130 53.8
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.5e-29 133.3 78 83.3
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 4.5e-26 124.0 101 59.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.5e-24 119.0 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 8.0e-23 113.2 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 6.8e-22 110.2 92 62.0
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 9.5e-16 89.7 53 77.4
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.0e-13 82.0 57 70.2
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 1.9e-08 65.5 55 52.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.9e-08 65.5 55 52.7
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 2.1e-07 62.0 51 56.9
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.4e-06 59.3 51 54.9
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.3e-06 58.5 30 76.7


User provided reference genes

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