Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.0e-179 633.3 317 100.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.2e-169 599.0 318 95.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.2e-158 562.4 319 89.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.3e-147 525.8 316 83.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.3e-139 499.2 317 78.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.1e-132 476.1 317 73.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 4.1e-128 461.8 317 72.2
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.7e-124 448.4 318 71.1
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.7e-124 448.4 318 71.1
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 3.1e-123 445.7 318 70.8
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.0e-123 445.3 337 67.1
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 4.1e-120 435.3 319 69.6
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 3.9e-118 428.7 318 68.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 3.3e-117 425.6 336 67.0
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 7.3e-117 424.5 319 68.0
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 9.5e-117 424.1 319 68.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 6.8e-115 417.9 318 67.3
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-112 410.6 318 66.0
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 7.1e-104 381.3 341 59.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 3.0e-102 375.9 322 59.6
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.8e-100 369.4 333 59.8
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 4.7e-100 368.6 327 58.1
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.1e-99 367.5 333 58.0
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.1e-99 367.5 330 59.7
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.8e-99 366.7 327 59.3
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.4e-99 366.3 325 58.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.4e-99 366.3 320 58.4
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.1e-99 365.9 320 58.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.0e-99 365.5 317 58.0
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.9e-99 364.8 331 58.0
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.9e-99 364.8 331 58.0
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.0e-98 363.2 349 55.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-98 362.8 329 56.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-98 362.8 329 56.8
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 3.4e-98 362.5 325 57.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.4e-98 362.5 321 59.2
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 5.8e-98 361.7 320 57.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 9.9e-98 360.9 322 57.5
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.7e-97 360.1 321 58.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.9e-97 359.4 328 58.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 8.4e-97 357.8 324 58.6
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 8.4e-97 357.8 324 58.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.4e-96 357.1 328 57.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.4e-96 357.1 329 58.4
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.4e-96 356.3 332 56.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 4.2e-96 355.5 326 57.4
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 7.1e-96 354.8 329 57.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.3e-96 354.4 339 56.6
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 1.2e-95 354.0 336 55.7
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 2.7e-95 352.8 327 56.9
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 7.8e-95 351.3 254 66.1
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 7.8e-95 351.3 321 58.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.0e-94 350.9 323 56.3
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.3e-94 350.5 326 58.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.0e-94 349.4 329 56.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.1e-94 348.6 327 54.7
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-93 347.1 362 51.1
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.5e-93 347.1 325 56.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.6e-93 345.1 329 54.4
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.3e-93 344.7 389 48.8
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 9.6e-93 344.4 375 51.5
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-92 343.2 320 56.6
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.8e-92 342.8 345 53.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.6e-92 342.4 340 54.1
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.6e-92 342.4 257 65.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.1e-91 340.9 320 56.6
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.4e-91 340.5 341 53.1
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.0e-91 339.0 271 61.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.2e-90 337.4 390 49.7
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.2e-90 337.4 254 63.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.2e-90 337.4 254 63.8
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.6e-90 336.3 329 54.4
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.5e-90 335.5 385 49.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 9.9e-90 334.3 331 54.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.9e-89 332.8 254 62.6
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.8e-89 332.4 334 52.1
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.4e-89 331.3 330 53.9
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-88 330.9 320 55.3
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 3.2e-88 329.3 331 56.2
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 4.2e-88 328.9 344 51.5
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 7.1e-88 328.2 324 55.9
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.1e-87 326.6 336 53.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.6e-87 325.5 325 51.7
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.6e-87 325.5 334 53.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.0e-87 325.1 259 61.0
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.0e-86 324.3 316 55.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.7e-86 321.2 356 50.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 8.7e-86 321.2 312 55.1
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.1e-85 320.9 351 51.6
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.1e-85 320.9 335 53.1
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.1e-85 320.9 254 59.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.1e-85 320.9 273 60.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.3e-85 319.3 328 53.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.6e-85 318.5 289 57.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.6e-84 317.0 329 53.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-84 317.0 390 45.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 3.8e-81 305.8 483 41.6
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.9e-80 303.5 341 51.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.9e-80 303.5 341 48.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.4e-80 303.1 229 63.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.1e-80 301.6 376 46.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.2e-79 300.8 324 50.3
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.0e-78 296.2 222 62.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.1e-78 295.4 294 53.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.5e-74 283.9 263 53.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.6e-74 283.1 316 48.4
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.4e-74 282.7 320 50.0
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.5e-73 278.5 339 46.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 9.3e-72 274.6 241 58.9
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-71 273.9 210 61.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-71 273.5 207 61.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 9.6e-69 264.6 321 44.5
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.6e-68 263.8 387 41.1
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.2e-64 249.2 159 68.6
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.7e-63 246.5 327 43.7
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.2e-60 236.9 246 50.8
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 2.0e-58 230.3 306 42.5
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.8e-57 226.1 254 47.6
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.0e-54 218.0 174 59.8
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.7e-54 215.3 227 44.9
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.6e-53 213.4 167 57.5
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 3.0e-46 189.9 380 33.9
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.1e-43 178.3 179 54.7
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.8e-38 164.1 149 55.7
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.7e-36 156.4 129 57.4
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.2e-34 151.4 312 32.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.2e-30 136.0 113 56.6
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.7e-25 120.9 80 67.5
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-23 114.4 105 53.3
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.4e-22 111.3 125 56.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.7e-20 103.2 96 50.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.0e-17 95.1 116 50.9
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.2e-15 88.2 94 58.5
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.8e-14 82.4 100 46.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.9e-14 82.0 52 61.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.7e-12 77.8 68 57.4
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 7.8e-10 68.9 53 62.3
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.3e-08 63.5 45 62.2


User provided reference genes

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