Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G45040 Arabidopsis thaliana HOM05D007226 ORTHO05D009160 1.0e-99 366.7 176 100.0
AL8G14200 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 2.0e-87 325.9 177 89.8
AL8G14380 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 2.6e-87 325.5 177 89.8
Carub.0008s0327 Capsella rubella HOM05D007226 ORTHO05D009160 2.2e-83 312.4 176 85.2
Thhalv10001050m.g Eutrema salsugineum HOM05D007226 ORTHO05D009160 6.1e-81 304.3 176 83.0
BcaC03g16718 Brassica carinata HOM05D007226 ORTHO05D009160 1.3e-78 296.6 176 81.2
C02p45740 Brassica napus HOM05D007226 ORTHO05D009160 1.7e-78 296.2 176 81.2
BolC2t10635H Brassica oleracea HOM05D007226 ORTHO05D009160 2.2e-78 295.8 176 80.7
CARHR177680 Cardamine hirsuta HOM05D007226 ORTHO05D009160 2.8e-78 295.4 173 82.7
BcaB07g30483 Brassica carinata HOM05D007226 ORTHO05D009160 1.6e-76 289.7 176 78.4
BolC2t10627H Brassica oleracea HOM05D007226 ORTHO05D009160 2.0e-76 289.3 171 81.3
A02p28790 Brassica napus HOM05D007226 ORTHO05D009160 2.7e-76 288.9 176 80.1
Sp2g09820 Schrenkiella parvula HOM05D007226 ORTHO05D009160 3.5e-76 288.5 173 79.8
BraA02t07911Z Brassica rapa HOM05D007226 ORTHO05D009160 4.5e-76 288.1 176 79.5
THA.LOC104812913 Tarenaya hassleriana HOM05D007226 ORTHO05D009160 7.0e-69 264.2 170 76.5
Aa31LG9G8170 Aethionema arabicum HOM05D007226 ORTHO05D009160 2.9e-67 258.8 200 65.5
C02p45640 Brassica napus HOM05D007226 ORTHO05D009160 8.0e-65 250.8 151 80.1
Potri.015G121101 Populus trichocarpa HOM05D007226 ORTHO05D009160 4.1e-61 238.4 145 77.2
QL11p017833 Quercus lobata HOM05D007226 ORTHO05D009160 2.9e-59 232.3 179 65.4
Nn7g38162 Nelumbo nucifera HOM05D007226 ORTHO05D009160 3.8e-59 231.9 130 78.5
Thecc.06G141800 Theobroma cacao HOM05D007226 ORTHO05D009160 8.6e-59 230.7 132 79.5
SGA_v2.0_scaffold175G39365 Striga asiatica HOM05D007226 ORTHO05D009160 1.5e-58 229.9 139 74.8
GSVIVG01012076001 Vitis vinifera HOM05D007226 ORTHO05D009160 1.5e-58 229.9 147 74.8
Nitab4.5_0003773g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 3.3e-58 228.8 129 78.3
Dinv05963 Davidia involucrata HOM05D007226 ORTHO05D009160 7.3e-58 227.6 145 71.7
Cc09_g06180 Coffea canephora HOM05D007226 ORTHO05D009160 1.2e-57 226.9 172 64.0
Cpa.g.sc135.15 Carica papaya HOM05D007226 ORTHO05D009160 1.6e-57 226.5 177 63.8
CiPaw.09G078000 Carya illinoinensis HOM05D007226 ORTHO05D009160 1.6e-57 226.5 168 64.3
Duzib192G0307 Durio zibethinus HOM05D007226 ORTHO05D009160 1.6e-57 226.5 145 73.1
Prupe.4G111200 Prunus persica HOM05D007226 ORTHO05D009160 1.6e-57 226.5 129 80.6
Actinidia22392 Actinidia chinensis HOM05D007226 ORTHO05D009160 2.1e-57 226.1 145 71.0
Migut.M01975 Erythranthe guttata HOM05D007226 ORTHO05D009160 2.1e-57 226.1 156 68.6
HanXRQChr14g0447221 Helianthus annuus HOM05D007226 ORTHO05D009160 2.1e-57 226.1 170 60.6
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 2.8e-57 225.7 127 79.5
PGSC0003DMG400010353 Solanum tuberosum HOM05D007226 ORTHO05D009160 2.8e-57 225.7 129 78.3
Cfa000717 Carpinus fangiana HOM05D007226 ORTHO05D009160 3.6e-57 225.3 154 69.5
Sabra15G0137600 Salix brachista HOM05D007226 ORTHO05D009160 3.6e-57 225.3 151 72.8
CSS0023119 Camellia sinensis var. sinensis HOM05D007226 ORTHO05D009160 4.7e-57 224.9 132 76.5
Ca_18766_v3 Cicer arietinum L. HOM05D007226 ORTHO05D009160 4.7e-57 224.9 164 64.0
Lj4g0002757 Lotus japonicus HOM05D007226 ORTHO05D009160 4.7e-57 224.9 146 69.2
Eucgr.E01876 Eucalyptus grandis HOM05D007226 ORTHO05D009160 1.0e-56 223.8 130 78.5
Medtr4g083990 Medicago truncatula HOM05D007226 ORTHO05D009160 1.4e-56 223.4 128 75.8
MD05G1252700 Malus domestica HOM05D007226 ORTHO05D009160 1.8e-56 223.0 128 78.1
COL.COLO4_30987 Corchorus olitorius HOM05D007226 ORTHO05D009160 2.3e-56 222.6 127 79.5
Sopen02g018030 Solanum pennellii HOM05D007226 ORTHO05D009160 2.3e-56 222.6 129 78.3
TAR371G1071 Trochodendron aralioides HOM05D007226 ORTHO05D009160 2.3e-56 222.6 170 64.1
Ciclev10017084m.g Citrus clementina HOM05D007226 ORTHO05D009160 3.0e-56 222.2 146 69.9
CAN.G149.55 Capsicum annuum HOM05D007226 ORTHO05D009160 5.2e-56 221.5 125 79.2
VMungo0251G0617 Vigna mungo HOM05D007226 ORTHO05D009160 6.8e-56 221.1 131 74.0
Phvul.002G098700 Phaseolus vulgaris HOM05D007226 ORTHO05D009160 8.9e-56 220.7 131 74.8
Rhsim02G0212700 Rhododendron simsii HOM05D007226 ORTHO05D009160 1.2e-55 220.3 141 71.6
Solyc02g068930.4 Solanum lycopersicum HOM05D007226 ORTHO05D009160 1.2e-55 220.3 129 78.3
FvH4_3g12220 Fragaria vesca HOM05D007226 ORTHO05D009160 2.0e-55 219.5 126 78.6
Gohir.D06G145000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 2.6e-55 219.2 152 66.4
Gorai.010G168700 Gossypium raimondii HOM05D007226 ORTHO05D009160 2.6e-55 219.2 152 66.4
Lalb_Chr05g0219731 Lupinus albus HOM05D007226 ORTHO05D009160 3.4e-55 218.8 172 61.0
ECA238G0615 Erigeron canadensis HOM05D007226 ORTHO05D009160 5.7e-55 218.0 174 62.1
FAN21G0149 Fragaria x ananassa HOM05D007226 ORTHO05D009160 5.7e-55 218.0 126 77.8
Manes.16G056825 Manihot esculenta HOM05D007226 ORTHO05D009160 7.5e-55 217.6 127 78.0
SalBow6G7060 Salvia bowleyana HOM05D007226 ORTHO05D009160 9.8e-55 217.2 137 73.7
SalBow8G0530 Salvia bowleyana HOM05D007226 ORTHO05D009160 9.8e-55 217.2 137 73.7
FAN25G1348 Fragaria x ananassa HOM05D007226 ORTHO05D009160 1.1e-53 213.8 126 76.2
Gohir.A06G141000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 1.4e-53 213.4 152 65.8
Atru.chr10.515 Acer truncatum HOM05D007226 ORTHO05D009160 2.4e-53 212.6 174 60.9
Glyma.07G221900 Glycine max HOM05D007226 ORTHO05D009160 4.1e-53 211.8 170 61.8
TWI38G0719 Tripterygium wilfordii HOM05D007226 ORTHO05D009160 1.6e-52 209.9 131 74.0
Haze_06036 Corylus avellana HOM05D007226 ORTHO05D009160 2.0e-52 209.5 209 53.1
RcHm_v2.0_Chr5g0020011 Rosa chinensis HOM05D007226 ORTHO05D009160 2.7e-52 209.1 116 81.0
ClCG01G025800 Citrullus lanatus HOM05D007226 ORTHO05D009160 5.9e-52 208.0 131 72.5
arahy.Tifrunner.gnm1.ann1.X3ZR55 Arachis hypogaea HOM05D007226 ORTHO05D009160 1.7e-51 206.5 130 72.3
Aqoxy1G01459 Aquilegia oxysepala HOM05D007226 ORTHO05D009160 2.3e-51 206.1 167 63.5
Lsat_1_v5_gn_2_62900 Lactuca sativa HOM05D007226 ORTHO05D009160 2.3e-51 206.1 135 68.9
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.0e-51 204.9 134 69.4
DCAR_004326 Daucus carota HOM05D007226 ORTHO05D009160 1.9e-50 203.0 151 65.6
Peaxi162Scf00149g00723 Petunia axillaris HOM05D007226 ORTHO05D009160 4.3e-50 201.8 105 82.9
TPR.G20974 Trifolium pratense HOM05D007226 ORTHO05D009160 4.3e-50 201.8 107 80.4
Oeu056023.2 Olea europaea HOM05D007226 ORTHO05D009160 1.6e-49 199.9 103 84.5
PSO675G1576 Papaver somniferum HOM05D007226 ORTHO05D009160 1.6e-49 199.9 126 73.0
CsaV3_6G053010 Cucumis sativus L. HOM05D007226 ORTHO05D009160 4.7e-49 198.4 132 68.9
CDE06G2689 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 6.2e-49 198.0 128 67.2
Nitab4.5_0001288g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 1.4e-48 196.8 153 63.4
arahy.Tifrunner.gnm1.ann1.8FEK6M Arachis hypogaea HOM05D007226 ORTHO05D009160 5.2e-48 194.9 105 79.0
vmacro03514 Vaccinium macrocarpon HOM05D007226 ORTHO05D009160 8.9e-48 194.1 180 55.0
CDE02G1897 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 4.4e-47 191.8 128 64.8
MELO3C007008.2 Cucumis melo HOM05D007226 ORTHO05D009160 3.7e-46 188.7 102 78.4
Sc15g0002750 Simmondsia chinensis HOM05D007226 ORTHO05D009160 3.2e-45 185.7 105 73.3
ATR0763G163 Amborella trichopoda HOM05D007226 ORTHO05D009160 2.1e-41 172.9 159 53.5
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.3e-40 169.5 107 71.0
SEGI_36655 Sequoiadendron giganteum HOM05D007226 ORTHO05D009160 4.0e-40 168.7 121 64.5
Sed0015403 Sechium edule HOM05D007226 ORTHO05D009160 2.9e-38 162.5 155 51.0
AagrBONN_evm.TU.Sc2ySwM_369.234 Anthoceros agrestis HOM05D007226 ORTHO05D009160 2.1e-36 156.4 94 69.1
SMO356G0712 Selaginella moellendorffii HOM05D007226 ORTHO05D009160 3.0e-35 152.5 117 59.8
Mapoly0135s0037 Marchantia polymorpha HOM05D007226 ORTHO05D009160 4.3e-34 148.7 112 58.9
Pp3c13_8590 Physcomitrium patens HOM05D007226 ORTHO05D009160 7.3e-34 147.9 89 68.5
Psat7g130920 Pisum sativum HOM05D007226 ORTHO05D009160 2.8e-33 146.0 134 56.7
MBI19_g38421_MAGBIO Magnolia biondii HOM05D007226 ORTHO05D009160 9.9e-31 137.5 130 52.3
Glyma.20G020600 Glycine max HOM05D007226 ORTHO05D009160 3.8e-30 135.6 145 48.3
HanXRQChr14g0447281 Helianthus annuus HOM05D007226 ORTHO05D009160 7.8e-28 127.9 132 50.0
Cre16.g670950 Chlamydomonas reinhardtii HOM05D007226 ORTHO05D009160 1.9e-26 123.2 89 56.2
HPP92_015945 Vanilla planifolia HOM05D007226 ORTHO05D009160 1.6e-25 120.2 117 51.3
Lj2C351T11 Lonicera japonica HOM05D007226 ORTHO05D009160 2.1e-25 119.8 68 76.5
MCO04G097 Micromonas commoda HOM05D007226 ORTHO05D009160 8.1e-25 117.9 89 53.9
Hma1.2p1_0040F.1_g025140 Hydrangea macrophylla HOM05D007226 ORTHO05D009160 3.4e-23 112.5 58 81.0
PSO541G5038 Papaver somniferum HOM05D007226 ORTHO05D009160 5.8e-23 111.7 79 67.1
PRCOL_00005064 Prasinoderma coloniale HOM05D007226 ORTHO05D009160 1.3e-17 94.0 88 47.7
MD10G1233800 Malus domestica HOM05D007226 ORTHO05D009160 5.1e-11 72.0 55 56.4
HPP92_015957 Vanilla planifolia HOM05D007226 ORTHO05D009160 2.2e-06 56.6 41 56.1


User provided reference genes

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