Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 4.3e-50 201.1 103 100.0
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.7e-49 197.6 103 98.1
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 3.1e-48 194.9 103 96.1
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 9.8e-47 189.9 103 93.2
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 9.8e-47 189.9 103 93.2
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 9.8e-47 189.9 103 93.2
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.7e-46 189.1 102 92.2
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 6.4e-46 187.2 103 91.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-46 186.8 103 92.2
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 8.3e-46 186.8 103 92.2
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 8.3e-46 186.8 102 92.2
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 1.9e-45 185.7 103 91.3
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 2.4e-45 185.3 102 91.2
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.4e-45 185.3 103 90.3
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.4e-45 185.3 103 90.3
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 3.2e-45 184.9 102 90.2
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 5.4e-45 184.1 103 91.3
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.2e-44 183.0 103 88.3
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 1.6e-44 182.6 103 90.3
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.7e-44 181.8 103 89.3
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.7e-44 181.8 103 89.3
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 8.9e-40 166.8 103 80.6
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.2e-39 166.4 103 80.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.2e-39 166.4 102 78.4
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.5e-39 166.0 103 79.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 79.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 79.6
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.0e-39 165.6 103 81.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 2.6e-39 165.2 103 78.6
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 3.4e-39 164.9 103 78.6
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.4e-39 164.5 103 79.6
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 5.8e-39 164.1 102 79.4
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 78.6
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 9.8e-39 163.3 103 78.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.3e-38 162.9 103 77.7
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 2.9e-38 161.8 103 77.7
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 3.7e-38 161.4 102 76.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 77.7
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 76.7
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 8.3e-38 160.2 102 75.5
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.9e-37 159.1 103 76.7
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 2.4e-37 158.7 103 75.7
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.4e-37 158.7 103 78.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 3.2e-37 158.3 103 76.7
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 3.2e-37 158.3 101 76.2
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 72.8
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 75.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 5.4e-37 157.5 99 79.8
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 73.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 74.8
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 5.4e-37 157.5 103 77.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.2e-36 156.4 102 74.5
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 72.8
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 75.7
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 2.1e-36 155.6 100 76.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 2.1e-36 155.6 100 76.0
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 2.1e-36 155.6 103 72.8
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.7e-36 155.2 102 73.5
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 75.7
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.6e-36 154.5 100 76.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.0e-36 154.1 102 73.5
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 7.8e-36 153.7 99 74.7
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.0e-35 153.3 99 75.8
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 72.8
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 71.8
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.7e-35 152.5 102 73.5
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 73.7
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 3.0e-35 151.8 98 75.5
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 3.0e-35 151.8 100 73.0
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 3.0e-35 151.8 94 76.6
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 3.0e-35 151.8 99 77.8
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 5.1e-35 151.0 99 73.7
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 5.1e-35 151.0 102 72.5
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 5.1e-35 151.0 102 71.6
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 8.6e-35 150.2 99 72.7
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.9e-34 149.1 94 76.6
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.9e-34 149.1 99 70.7
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 2.5e-34 148.7 100 74.0
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 2.5e-34 148.7 102 69.6
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 103 70.9
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 3.3e-34 148.3 101 70.3
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 4.3e-34 147.9 103 70.9
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 5.6e-34 147.5 103 71.8
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 9.5e-34 146.7 101 70.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.5e-34 146.7 101 70.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.5e-34 146.7 101 70.3
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 9.5e-34 146.7 103 69.9
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 1.2e-33 146.4 102 69.6
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 1.2e-33 146.4 101 69.3
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.6e-33 146.0 97 71.1
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 2.1e-33 145.6 99 73.7
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 2.8e-33 145.2 100 69.0
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.8e-33 145.2 101 69.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 2.8e-33 145.2 103 67.0
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.6e-33 144.8 99 73.7
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.6e-33 144.8 103 68.9
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.7e-33 144.4 103 68.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 6.2e-33 144.1 100 69.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 69.9
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 67.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 8.1e-33 143.7 103 67.0
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.4e-32 142.9 102 66.7
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.4e-32 142.9 103 67.0
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 66.0
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 68.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.3e-32 142.1 103 66.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 5.2e-32 141.0 103 66.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.2e-31 139.8 96 70.8
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.5e-31 139.4 102 65.7
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.0e-31 139.0 100 69.0
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 2.0e-31 139.0 100 67.0
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.4e-31 137.9 98 70.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 4.4e-31 137.9 98 70.4
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 7.5e-31 137.1 99 68.7
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.3e-30 136.3 99 67.7
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 2.9e-30 135.2 99 70.7
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 3.7e-30 134.8 98 67.3
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.9e-30 134.4 103 64.1
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 8.3e-30 133.7 99 69.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.4e-29 132.9 99 69.7
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-28 129.8 99 67.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.2e-28 129.8 99 67.7
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 9.5e-26 120.2 103 68.0
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.8e-25 118.6 105 63.8
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.6e-25 118.2 104 64.4
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 6.2e-25 117.5 62 91.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 1.1e-24 116.7 160 43.1
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 8.9e-24 113.6 74 70.3
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.3e-22 109.8 77 64.9
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 7.1e-21 104.0 72 65.3
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 7.1e-21 104.0 81 61.7
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.2e-20 103.2 73 68.5
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.2e-20 103.2 88 61.4
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 3.5e-20 101.7 73 61.6
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.0e-20 100.9 69 63.8
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 6.0e-20 100.9 69 62.3
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.0e-19 100.1 73 58.9
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.3e-19 99.8 73 57.5
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.7e-19 97.1 90 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.5e-18 96.3 85 57.6
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.4e-15 84.7 75 62.7
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 7.6e-15 84.0 83 53.0
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.2e-14 82.4 54 75.9
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.4e-13 79.7 98 50.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 1.5e-10 69.7 58 55.2
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 7.6e-07 57.4 84 45.2
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 9.9e-07 57.0 89 39.3


User provided reference genes

Program Settings