Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 4.6e-170 601.3 335 100.0
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.2e-131 472.2 337 83.7
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 5.4e-94 348.6 353 64.9
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 4.5e-93 345.5 342 65.2
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.8e-81 307.0 369 61.2
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 2.8e-74 283.1 352 59.4
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 7.5e-72 275.0 349 57.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 9.9e-72 274.6 348 56.9
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.2e-71 273.5 353 56.9
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 4.9e-71 272.3 358 58.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 6.4e-71 271.9 353 56.9
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 6.4e-71 271.9 353 56.9
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 3.9e-68 262.7 351 57.0
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 2.4e-65 253.4 356 52.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-64 249.2 348 55.2
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 5.4e-62 242.3 354 51.7
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-61 240.7 350 51.7
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 4.4e-56 222.6 346 50.6
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 4.4e-56 222.6 341 51.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 5.8e-56 222.2 346 50.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-55 220.7 346 49.7
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 2.0e-48 197.2 341 47.5
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 7.6e-48 195.3 283 51.6
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 1.9e-43 180.6 271 51.3
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.8e-31 139.8 382 41.1
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 4.9e-31 139.4 366 39.6
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 4.9e-31 139.4 366 39.6
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 6.5e-31 139.0 402 39.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 8.4e-31 138.7 410 38.3
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 8.4e-31 138.7 370 40.5
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-30 137.9 389 38.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 4.2e-30 136.3 381 41.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 7.1e-30 135.6 429 37.1
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.1e-29 134.0 381 40.7
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-29 134.0 418 38.5
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.1e-29 134.0 418 38.5
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 6.0e-29 132.5 420 38.1
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 1.0e-28 131.7 382 39.3
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.3e-28 130.6 370 39.7
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-28 130.6 370 39.7
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.9e-28 129.8 404 39.1
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 8.7e-28 128.6 416 38.2
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-27 127.9 399 38.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 9.7e-27 125.2 425 36.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-26 124.0 421 36.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-25 121.7 375 39.2
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.1e-25 120.2 415 34.9
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 9.0e-25 118.6 418 35.6
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.5e-24 117.9 429 35.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.4e-22 111.3 429 34.3
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.0e-20 103.6 434 32.7
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 4.2e-14 83.2 177 40.1
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 5.1e-12 76.3 183 37.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 5.1e-12 76.3 178 39.3
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.5e-11 74.7 177 37.3
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.6e-11 73.9 187 34.8
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 7.4e-11 72.4 446 29.1
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.2e-10 70.9 178 34.3
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.8e-10 70.5 177 35.0
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.8e-10 70.5 381 29.7
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 3.7e-10 70.1 409 28.6
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 3.7e-10 70.1 164 37.2
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.7e-10 70.1 272 28.7
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 4.8e-10 69.7 191 32.5
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.8e-09 67.8 370 27.8
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.4e-09 67.4 430 28.4
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.1e-09 67.0 186 36.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.5e-08 64.7 182 33.0
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.5e-08 64.7 374 29.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.0e-08 64.3 449 27.8
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 2.0e-08 64.3 170 34.1
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.6e-08 63.9 79 46.8
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.4e-08 63.5 165 35.2
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 3.4e-08 63.5 431 28.1
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.5e-08 63.2 187 35.8
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.5e-08 63.2 392 27.3
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 4.5e-08 63.2 367 27.5
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.5e-08 63.2 184 32.6
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 5.9e-08 62.8 431 27.8
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 7.7e-08 62.4 180 29.4
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 7.7e-08 62.4 421 28.7
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.0e-07 62.0 164 34.1
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.9e-07 60.5 188 33.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 3.8e-07 60.1 328 29.3
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 3.8e-07 60.1 367 28.1
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.8e-07 60.1 193 34.2
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.8e-07 60.1 343 30.3
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 6.5e-07 59.3 200 32.0
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.5e-07 59.3 183 30.1
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 6.5e-07 59.3 417 27.3
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.5e-07 58.9 181 30.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 8.5e-07 58.9 184 38.0
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 8.5e-07 58.9 336 28.3
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 8.5e-07 58.9 180 31.1
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.4e-06 58.2 62 48.4
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.4e-06 58.2 384 26.3
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.9e-06 57.8 84 44.0
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.9e-06 57.8 371 29.6
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.9e-06 57.8 305 29.2
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 2.5e-06 57.4 428 27.1
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.5e-06 57.4 187 31.0
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 2.5e-06 57.4 464 26.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 3.2e-06 57.0 55 58.2
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.2e-06 56.6 83 39.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 5.5e-06 56.2 408 26.7
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 5.5e-06 56.2 343 28.3
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 7.2e-06 55.8 374 29.4
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 7.2e-06 55.8 362 25.1
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 7.2e-06 55.8 362 25.7
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 9.4e-06 55.5 173 34.1
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 9.4e-06 55.5 53 52.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 9.4e-06 55.5 180 29.4


User provided reference genes

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