Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.5e-61 238.0 115 100.0
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.0e-60 235.0 115 98.3
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.2e-56 223.0 115 94.8
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 3.2e-54 214.9 115 89.6
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 3.2e-54 214.9 115 89.6
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 3.2e-54 214.9 115 89.6
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.2e-54 214.9 115 87.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 7.1e-54 213.8 115 88.7
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.8e-53 210.3 115 88.7
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.4e-49 198.7 115 81.7
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 7.6e-48 193.7 103 89.3
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.5e-45 184.9 120 80.0
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 8.7e-44 180.3 99 86.9
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 4.9e-31 137.9 92 75.0
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 2.7e-29 132.1 110 59.1
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 2.7e-29 132.1 110 59.1
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 3.5e-29 131.7 109 59.6
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 56.4
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 56.4
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 56.4
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 59.1
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 56.4
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 56.4
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 3.5e-29 131.7 110 57.3
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 7.9e-29 130.6 110 58.2
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 7.9e-29 130.6 120 58.3
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 7.9e-29 130.6 110 56.4
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.0e-28 130.2 110 58.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.0e-28 130.2 110 58.2
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.8e-28 129.4 110 57.3
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.3e-28 129.0 120 58.3
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 3.0e-28 128.6 108 56.5
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.7e-28 127.5 110 56.4
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.7e-28 127.5 110 56.4
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.5e-27 125.6 114 57.0
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 7.4e-27 124.0 108 57.4
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.6e-26 122.9 124 54.8
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 2.8e-26 122.1 127 50.4
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 3.7e-26 121.7 120 49.2
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 3.7e-26 121.7 114 57.9
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.7e-26 121.7 116 56.0
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 4.8e-26 121.3 119 55.5
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 6.3e-26 120.9 116 54.3
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 6.3e-26 120.9 120 50.8
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 8.2e-26 120.6 128 50.8
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 8.2e-26 120.6 120 53.3
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.1e-25 120.2 121 52.1
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.1e-25 120.2 121 52.1
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 1.8e-25 119.4 122 53.3
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 3.1e-25 118.6 119 55.5
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 3.1e-25 118.6 119 55.5
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 3.1e-25 118.6 127 50.4
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 4.1e-25 118.2 125 50.4
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 6.9e-25 117.5 126 50.0
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 9.0e-25 117.1 120 53.3
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.2e-24 116.7 114 54.4
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 126 51.6
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.5e-24 116.3 110 51.8
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.5e-24 116.3 119 56.3
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.5e-24 116.3 122 54.1
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.5e-24 116.3 127 53.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 3.4e-24 115.2 124 47.6
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 3.4e-24 115.2 131 49.6
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 4.5e-24 114.8 106 57.5
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 4.5e-24 114.8 118 54.2
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.5e-24 114.8 120 51.7
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 5.9e-24 114.4 120 54.2
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 5.9e-24 114.4 114 53.5
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 1.0e-23 113.6 118 55.1
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.3e-23 113.2 120 47.5
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.3e-23 113.2 126 49.2
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.3e-23 113.2 112 52.7
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 1.7e-23 112.8 123 51.2
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 1.7e-23 112.8 102 55.9
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 1.7e-23 112.8 121 51.2
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 2.2e-23 112.5 122 50.0
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 2.9e-23 112.1 119 52.1
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.9e-23 112.1 116 54.3
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 3.8e-23 111.7 125 51.2
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 3.8e-23 111.7 125 49.6
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 3.8e-23 111.7 125 51.2
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 3.8e-23 111.7 119 51.3
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 3.8e-23 111.7 134 47.0
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 5.0e-23 111.3 130 50.8
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 5.0e-23 111.3 123 51.2
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 6.5e-23 110.9 125 49.6
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 6.5e-23 110.9 121 49.6
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 6.5e-23 110.9 122 50.0
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 6.5e-23 110.9 123 51.2
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 8.4e-23 110.5 130 47.7
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 8.4e-23 110.5 122 52.5
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 54.3
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 54.3
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 1.1e-22 110.2 122 50.8
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.9e-22 109.4 121 48.8
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 1.9e-22 109.4 124 50.8
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 3.2e-22 108.6 114 51.8
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 3.2e-22 108.6 116 48.3
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 4.2e-22 108.2 117 52.1
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 4.2e-22 108.2 121 49.6
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 5.5e-22 107.8 120 51.7
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 7.2e-22 107.5 116 51.7
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 7.2e-22 107.5 121 49.6
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 9.3e-22 107.1 123 52.8
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.2e-21 106.7 126 47.6
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.6e-21 106.3 124 46.8
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.6e-21 106.3 116 49.1
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 1.6e-21 106.3 122 50.0
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 2.7e-21 105.5 109 52.3
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 3.5e-21 105.1 130 49.2
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.6e-21 104.8 122 47.5
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 6.1e-21 104.4 124 44.4
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 7.9e-21 104.0 119 48.7
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 7.9e-21 104.0 120 48.3
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.9e-21 104.0 108 50.9
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.9e-21 104.0 111 50.5
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.9e-21 104.0 116 50.0
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 7.9e-21 104.0 116 50.0
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 7.9e-21 104.0 129 45.7
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.0e-20 103.6 123 48.8
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.0e-20 103.6 124 49.2
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.3e-20 103.2 128 46.1
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.3e-20 103.2 124 49.2
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.8e-20 102.8 127 48.0
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.8e-20 102.8 124 46.0
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 2.3e-20 102.4 119 48.7
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 2.3e-20 102.4 119 48.7
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 2.3e-20 102.4 120 50.0
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.0e-20 102.1 119 48.7
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 3.0e-20 102.1 114 48.2
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 3.0e-20 102.1 127 46.5
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 3.0e-20 102.1 117 50.4
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.0e-20 102.1 109 52.3
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 5.1e-20 101.3 121 45.5
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 5.1e-20 101.3 113 52.2
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 6.7e-20 100.9 122 45.1
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 8.7e-20 100.5 67 68.7
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 8.7e-20 100.5 121 48.8
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.5e-19 99.8 104 52.9
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 1.5e-19 99.8 120 45.0
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 2.5e-19 99.0 110 49.1
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 2.5e-19 99.0 110 49.1
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 4.3e-19 98.2 129 46.5
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 4.3e-19 98.2 123 45.5
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 4.3e-19 98.2 112 50.0
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 7.4e-19 97.4 121 45.5
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 9.7e-19 97.1 111 51.4
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 1.6e-18 96.3 122 42.6
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 1.6e-18 96.3 122 42.6
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 1.6e-18 96.3 122 42.6
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 2.8e-18 95.5 106 49.1
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 2.8e-18 95.5 128 45.3
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 3.7e-18 95.1 112 49.1
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 4.8e-18 94.7 119 41.2
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 6.3e-18 94.4 118 42.4
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 6.3e-18 94.4 139 42.4
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.8e-17 92.8 111 49.5
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 1.8e-17 92.8 126 45.2
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.8e-17 92.8 106 51.9
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 3.1e-17 92.0 110 43.6
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 4.1e-17 91.7 113 46.9
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.1e-17 91.7 109 47.7
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 1.5e-16 89.7 125 41.6
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 4.5e-16 88.2 114 43.9
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 5.9e-16 87.8 112 46.4
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 5.9e-16 87.8 105 46.7
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 7.7e-16 87.4 117 40.2
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.0e-15 87.0 114 49.1
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 5.0e-15 84.7 110 43.6
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 4.2e-14 81.6 100 48.0
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.2e-13 80.1 151 37.1
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 1.1e-11 73.6 96 44.8
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 3.3e-11 72.0 112 37.5
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 7.4e-11 70.9 159 34.0
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.2e-10 69.3 142 32.4
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.8e-10 68.9 151 34.4
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 3.7e-10 68.6 76 51.3
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 4.8e-10 68.2 121 39.7
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 5.9e-08 61.2 153 32.0
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 1.7e-07 59.7 120 35.0
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.5e-06 55.8 121 34.7


User provided reference genes

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