Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G43155 Arabidopsis thaliana HOM05D000641 ORTHO05D000944 3.6e-124 448.4 239 100.0
AL8G17490 Arabidopsis lyrata HOM05D000641 ORTHO05D000944 1.2e-90 337.0 245 81.2
Carub.0008s0553 Capsella rubella HOM05D000641 ORTHO05D000944 2.1e-68 263.1 252 67.9
CARHR180750 Cardamine hirsuta HOM05D000641 ORTHO05D000944 1.4e-56 223.8 280 56.4
Aa31LG9G13250 Aethionema arabicum HOM05D000641 ORTHO05D000944 4.0e-43 179.1 297 47.8
Sp2g07940 Schrenkiella parvula HOM05D000641 ORTHO05D000944 5.2e-43 178.7 272 49.3
BcaC06g34673 Brassica carinata HOM05D000641 ORTHO05D000944 3.2e-40 169.5 263 51.0
C07p25730 Brassica napus HOM05D000641 ORTHO05D000944 4.6e-39 165.6 265 49.8
BolC7t43093H Brassica oleracea HOM05D000641 ORTHO05D000944 4.6e-39 165.6 265 49.8
BcaC06g34675 Brassica carinata HOM05D000641 ORTHO05D000944 2.5e-37 159.8 254 50.8
THA.LOC104814682 Tarenaya hassleriana HOM05D000641 ORTHO05D000944 4.9e-33 145.6 320 43.1
BcaC06g31718 Brassica carinata HOM05D000641 ORTHO05D000944 1.2e-31 141.0 238 50.4
BraA06t27670Z Brassica rapa HOM05D000641 ORTHO05D000944 1.6e-28 130.6 227 50.7
FAN20G1023 Fragaria x ananassa HOM05D000641 ORTHO05D000944 2.0e-18 97.1 316 32.6
COL.COLO4_28521 Corchorus olitorius HOM05D000641 ORTHO05D000944 4.5e-18 95.9 286 35.0
FvH4_2g33270 Fragaria vesca HOM05D000641 ORTHO05D000944 1.0e-17 94.7 322 32.6
FAN24G0570 Fragaria x ananassa HOM05D000641 ORTHO05D000944 1.0e-17 94.7 322 32.6
RcHm_v2.0_Chr6g0309371 Rosa chinensis HOM05D000641 ORTHO05D000944 1.7e-17 94.0 299 33.1
FAN15G3605 Fragaria x ananassa HOM05D000641 ORTHO05D000944 2.9e-17 93.2 301 31.2
Gohir.A05G208600 Gossypium hirsutum HOM05D000641 ORTHO05D000944 2.9e-17 93.2 298 33.6
Ciclev10000532m.g Citrus clementina HOM05D000641 ORTHO05D000944 3.8e-17 92.8 264 34.8
Manes.18G045100 Manihot esculenta HOM05D000641 ORTHO05D000944 3.8e-17 92.8 301 35.2
Hma1.2p1_1174F.1_g263800 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 4.9e-17 92.4 267 37.1
Thecc.08G090900 Theobroma cacao HOM05D000641 ORTHO05D000944 6.5e-17 92.0 303 34.0
MD08G1086900 Malus domestica HOM05D000641 ORTHO05D000944 8.4e-17 91.7 239 36.4
Gorai.009G218600 Gossypium raimondii HOM05D000641 ORTHO05D000944 1.1e-16 91.3 298 33.6
Nn1g04601 Nelumbo nucifera HOM05D000641 ORTHO05D000944 1.1e-16 91.3 217 37.8
Potri.014G017500 Populus trichocarpa HOM05D000641 ORTHO05D000944 1.4e-16 90.9 260 34.2
Gohir.D05G212000 Gossypium hirsutum HOM05D000641 ORTHO05D000944 1.9e-16 90.5 298 33.6
Cfa013676 Carpinus fangiana HOM05D000641 ORTHO05D000944 3.2e-16 89.7 252 36.1
Nn5g30541 Nelumbo nucifera HOM05D000641 ORTHO05D000944 3.2e-16 89.7 220 37.7
Prupe.1G424500 Prunus persica HOM05D000641 ORTHO05D000944 3.2e-16 89.7 243 36.2
FAN27G0288 Fragaria x ananassa HOM05D000641 ORTHO05D000944 4.2e-16 89.4 318 31.4
Sabra14G0011400 Salix brachista HOM05D000641 ORTHO05D000944 4.2e-16 89.4 262 34.0
MD15G1071600 Malus domestica HOM05D000641 ORTHO05D000944 5.5e-16 89.0 239 36.4
TWI12G0182 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 5.5e-16 89.0 312 33.3
Cpa.g.sc21.101 Carica papaya HOM05D000641 ORTHO05D000944 9.3e-16 88.2 228 35.1
Potri.002G119500 Populus trichocarpa HOM05D000641 ORTHO05D000944 2.1e-15 87.0 253 34.0
Gohir.D06G020500 Gossypium hirsutum HOM05D000641 ORTHO05D000944 2.7e-15 86.7 271 34.3
DCAR_029116 Daucus carota HOM05D000641 ORTHO05D000944 3.5e-15 86.3 255 37.3
TAR628G0131 Trochodendron aralioides HOM05D000641 ORTHO05D000944 3.5e-15 86.3 307 33.6
THA.LOC104801606 Tarenaya hassleriana HOM05D000641 ORTHO05D000944 6.0e-15 85.5 216 36.1
MELO3C010814.2 Cucumis melo HOM05D000641 ORTHO05D000944 1.0e-14 84.7 232 34.1
Duzib116G0728 Durio zibethinus HOM05D000641 ORTHO05D000944 1.3e-14 84.3 261 32.6
Gorai.010G025000 Gossypium raimondii HOM05D000641 ORTHO05D000944 1.3e-14 84.3 273 33.7
Sed0012085 Sechium edule HOM05D000641 ORTHO05D000944 1.3e-14 84.3 228 35.5
Duzib093G1400 Durio zibethinus HOM05D000641 ORTHO05D000944 1.8e-14 84.0 282 33.7
Sabra02G0094100 Salix brachista HOM05D000641 ORTHO05D000944 2.3e-14 83.6 237 35.9
GSVIVG01037854001 Vitis vinifera HOM05D000641 ORTHO05D000944 2.3e-14 83.6 251 33.5
DCAR_012812 Daucus carota HOM05D000641 ORTHO05D000944 3.0e-14 83.2 253 34.8
Gohir.A06G023300 Gossypium hirsutum HOM05D000641 ORTHO05D000944 3.0e-14 83.2 273 33.3
Duzib041G0512 Durio zibethinus HOM05D000641 ORTHO05D000944 3.9e-14 82.8 260 33.8
GSVIVG01009361001 Vitis vinifera HOM05D000641 ORTHO05D000944 5.1e-14 82.4 268 36.6
ClCG08G016390 Citrullus lanatus HOM05D000641 ORTHO05D000944 6.7e-14 82.0 237 36.3
DCAR_001683 Daucus carota HOM05D000641 ORTHO05D000944 1.1e-13 81.3 274 35.8
Manes.05G180700 Manihot esculenta HOM05D000641 ORTHO05D000944 1.1e-13 81.3 265 35.5
PGR031G0418 Punica granatum HOM05D000641 ORTHO05D000944 4.3e-13 79.3 320 31.2
CSS0009467 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D000944 5.7e-13 79.0 238 36.1
CiPaw.07G176500 Carya illinoinensis HOM05D000641 ORTHO05D000944 9.7e-13 78.2 298 32.2
Hma1.2p1_1773F.1_g301690 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 9.7e-13 78.2 230 37.0
Prupe.8G142000 Prunus persica HOM05D000641 ORTHO05D000944 9.7e-13 78.2 240 34.2
Psat6g016560 Pisum sativum HOM05D000641 ORTHO05D000944 1.3e-12 77.8 296 32.1
CsaV3_2G026220 Cucumis sativus L. HOM05D000641 ORTHO05D000944 1.6e-12 77.4 253 33.6
QL12p037658 Quercus lobata HOM05D000641 ORTHO05D000944 3.7e-12 76.3 272 31.6
Sed0002558 Sechium edule HOM05D000641 ORTHO05D000944 3.7e-12 76.3 265 33.6
Atru.chr13.814 Acer truncatum HOM05D000641 ORTHO05D000944 4.8e-12 75.9 244 34.0
Haze_22317 Corylus avellana HOM05D000641 ORTHO05D000944 4.8e-12 75.9 260 31.9
Cc02_g19710 Coffea canephora HOM05D000641 ORTHO05D000944 6.3e-12 75.5 316 30.7
ClCG05G020500 Citrullus lanatus HOM05D000641 ORTHO05D000944 8.2e-12 75.1 221 36.2
MELO3C016807.2 Cucumis melo HOM05D000641 ORTHO05D000944 1.1e-11 74.7 243 34.2
CsaV3_4G034920 Cucumis sativus L. HOM05D000641 ORTHO05D000944 1.1e-11 74.7 243 34.2
Lj4C69T11 Lonicera japonica HOM05D000641 ORTHO05D000944 1.8e-11 73.9 289 31.5
Dinv42224 Davidia involucrata HOM05D000641 ORTHO05D000944 3.1e-11 73.2 302 32.1
MD10G1103300 Malus domestica HOM05D000641 ORTHO05D000944 3.1e-11 73.2 309 30.4
TWI12G0257 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 3.1e-11 73.2 285 30.9
Dinv44969 Davidia involucrata HOM05D000641 ORTHO05D000944 4.1e-11 72.8 252 32.1
TPR.G35991 Trifolium pratense HOM05D000641 ORTHO05D000944 5.3e-11 72.4 314 31.5
TAR376G0410 Trochodendron aralioides HOM05D000641 ORTHO05D000944 5.3e-11 72.4 217 36.9
vmacro19528 Vaccinium macrocarpon HOM05D000641 ORTHO05D000944 5.3e-11 72.4 247 34.0
Actinidia27985 Actinidia chinensis HOM05D000641 ORTHO05D000944 6.9e-11 72.0 238 36.6
TAR381G0627 Trochodendron aralioides HOM05D000641 ORTHO05D000944 6.9e-11 72.0 212 34.9
Migut.B00431 Erythranthe guttata HOM05D000641 ORTHO05D000944 2.6e-10 70.1 270 31.5
Glyma.14G087900 Glycine max HOM05D000641 ORTHO05D000944 7.7e-10 68.6 286 30.1
CAN.G606.48 Capsicum annuum HOM05D000641 ORTHO05D000944 1.0e-09 68.2 311 30.2
Ciclev10028034m.g Citrus clementina HOM05D000641 ORTHO05D000944 1.0e-09 68.2 287 29.6
Rhsim05G0090200 Rhododendron simsii HOM05D000641 ORTHO05D000944 1.0e-09 68.2 236 34.7
Sopen01g049460 Solanum pennellii HOM05D000641 ORTHO05D000944 1.3e-09 67.8 310 30.6
CANSAT25G2917 Cannabis sativa HOM05D000641 ORTHO05D000944 1.7e-09 67.4 253 30.4
Medtr1g018440 Medicago truncatula HOM05D000641 ORTHO05D000944 1.7e-09 67.4 307 30.6
Oeu011143.1 Olea europaea HOM05D000641 ORTHO05D000944 1.7e-09 67.4 326 31.6
Solyc01g107200.4 Solanum lycopersicum HOM05D000641 ORTHO05D000944 1.7e-09 67.4 240 32.5
CSS0040494 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D000944 2.2e-09 67.0 307 32.6
Actinidia04379 Actinidia chinensis HOM05D000641 ORTHO05D000944 3.8e-09 66.2 241 33.2
Hund12604 Selenicereus undatus HOM05D000641 ORTHO05D000944 3.8e-09 66.2 301 29.2
Ca_13234_v3 Cicer arietinum L. HOM05D000641 ORTHO05D000944 6.5e-09 65.5 293 29.4
unitig_62.g23638 Utricularia gibba HOM05D004093 ORTHO05D004981 8.5e-09 65.1 246 30.9
Actinidia22684 Actinidia chinensis HOM05D000641 ORTHO05D000944 1.1e-08 64.7 244 28.7
Nitab4.5_0011243g0010 Nicotiana tabacum HOM05D000641 ORTHO05D000944 1.4e-08 64.3 336 28.9
Oeu037269.1 Olea europaea HOM05D000641 ORTHO05D000944 1.4e-08 64.3 284 33.5
Oeu037270.2 Olea europaea HOM05D000641 ORTHO05D000944 1.4e-08 64.3 284 33.5
Sp1g36770 Schrenkiella parvula HOM05D000641 ORTHO05D000944 1.4e-08 64.3 306 28.8
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.4e-08 64.3 223 32.7
Lsat_1_v5_gn_4_130781 Lactuca sativa HOM05D000641 ORTHO05D000944 2.5e-08 63.5 296 30.1
Nitab4.5_0000197g0080 Nicotiana tabacum HOM05D000641 ORTHO05D000944 2.5e-08 63.5 263 31.9
Peaxi162Scf00016g02743 Petunia axillaris HOM05D000641 ORTHO05D000944 2.5e-08 63.5 307 30.6
Hund05314 Selenicereus undatus HOM05D000641 ORTHO05D000944 2.5e-08 63.5 241 30.3
MSTRG.5326 Avicennia marina HOM05D000641 ORTHO05D000944 4.2e-08 62.8 258 31.4
Sed0019586 Sechium edule HOM05D000641 ORTHO05D000944 5.5e-08 62.4 304 30.6
A01p35110 Brassica napus HOM05D000641 ORTHO05D000944 7.2e-08 62.0 278 30.2
MELO3C018513.2 Cucumis melo HOM05D000641 ORTHO05D000944 7.2e-08 62.0 313 29.7
CsaV3_7G007900 Cucumis sativus L. HOM05D000641 ORTHO05D000944 7.2e-08 62.0 313 29.7
Hma1.2p1_1023F.1_g248870 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 7.2e-08 62.0 241 35.3
Phvul.001G026600 Phaseolus vulgaris HOM05D000641 ORTHO05D000944 9.4e-08 61.6 293 30.7
Thhalv10011296m.g Eutrema salsugineum HOM05D000641 ORTHO05D000944 2.1e-07 60.5 306 28.1
SalBow3G3991 Salvia bowleyana HOM05D000641 ORTHO05D000944 2.1e-07 60.5 254 30.3
MSTRG.16688 Avicennia marina HOM05D000641 ORTHO05D000944 2.7e-07 60.1 251 31.1
ClCG02G006740 Citrullus lanatus HOM05D000641 ORTHO05D000944 2.7e-07 60.1 313 29.7
Gohir.A03G183700 Gossypium hirsutum HOM05D000641 ORTHO05D000944 2.7e-07 60.1 237 32.9
VMungo0647G1708 Vigna mungo HOM05D000641 ORTHO05D000944 2.7e-07 60.1 287 29.3
Nitab4.5_0001105g0160 Nicotiana tabacum HOM05D000641 ORTHO05D000944 3.6e-07 59.7 336 28.0
RcHm_v2.0_Chr4g0405481 Rosa chinensis HOM05D000641 ORTHO05D000944 3.6e-07 59.7 130 36.2
Lsat_1_v5_gn_9_112361 Lactuca sativa HOM05D000641 ORTHO05D000944 4.6e-07 59.3 309 30.7
Nitab4.5_0000164g0220 Nicotiana tabacum HOM05D000641 ORTHO05D000944 4.6e-07 59.3 255 29.4
ECA232G0888 Erigeron canadensis HOM05D000641 ORTHO05D000944 6.1e-07 58.9 309 29.8
Gohir.D02G203000 Gossypium hirsutum HOM05D000641 ORTHO05D000944 6.1e-07 58.9 258 29.5
PGR083G1418 Punica granatum HOM05D000641 ORTHO05D000944 6.1e-07 58.9 238 31.5
unitig_52.g17419 Utricularia gibba HOM05D000641 ORTHO05D000944 7.9e-07 58.5 228 32.9
MSTRG.27754 Avicennia marina HOM05D000641 ORTHO05D000944 1.4e-06 57.8 259 31.7
BcaC09g48922 Brassica carinata HOM05D000641 ORTHO05D000944 1.4e-06 57.8 260 30.4
BolC1t04420H Brassica oleracea HOM05D000641 ORTHO05D000944 1.4e-06 57.8 278 28.4
Glyma.10G258400 Glycine max HOM05D000641 ORTHO05D000944 1.4e-06 57.8 285 28.8
arahy.Tifrunner.gnm1.ann1.45LA2C Arachis hypogaea HOM05D000641 ORTHO05D000944 1.8e-06 57.4 279 28.3
CDE04G1052 Ceratophyllum demersum HOM05D000641 ORTHO05D000944 1.8e-06 57.4 244 29.1
Manes.10G080600 Manihot esculenta HOM05D000641 ORTHO05D000944 1.8e-06 57.4 239 30.5
Eucgr.F02263 Eucalyptus grandis HOM05D000641 ORTHO05D000944 2.3e-06 57.0 306 27.5
FAN15G3708 Fragaria x ananassa HOM05D000641 ORTHO05D000944 2.3e-06 57.0 180 36.7
MSTRG.1029 Avicennia marina HOM05D000641 ORTHO05D000944 3.0e-06 56.6 287 30.3
BraA01t03593Z Brassica rapa HOM05D000641 ORTHO05D000944 3.0e-06 56.6 274 29.6
HanXRQChr09g0266591 Helianthus annuus HOM05D000641 ORTHO05D000944 3.9e-06 56.2 275 30.2
RcHm_v2.0_Chr6g0253431 Rosa chinensis HOM05D000641 ORTHO05D000944 3.9e-06 56.2 269 30.1
Aqoxy5G00894 Aquilegia oxysepala HOM05D000641 ORTHO05D000944 5.1e-06 55.8 218 28.4
FAN20G0074 Fragaria x ananassa HOM05D000641 ORTHO05D000944 5.1e-06 55.8 180 36.7
Actinidia38099 Actinidia chinensis HOM05D000641 ORTHO05D000944 6.7e-06 55.5 288 29.5
FvH4_2g04080 Fragaria vesca HOM05D000641 ORTHO05D000944 6.7e-06 55.5 189 38.1
unitig_22.g6843 Utricularia gibba HOM05D000641 ORTHO05D000944 6.7e-06 55.5 235 28.5
C01p44540 Brassica napus HOM05D000641 ORTHO05D000944 8.8e-06 55.1 278 28.8
MD05G1097600 Malus domestica HOM05D000641 ORTHO05D000944 8.8e-06 55.1 262 30.9
Oeu027705.1 Olea europaea HOM05D000641 ORTHO05D000944 8.8e-06 55.1 298 31.9


User provided reference genes

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