Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 1.2e-116 423.3 230 100.0
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 5.1e-104 381.3 230 90.9
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 1.1e-101 373.6 232 84.9
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 1.6e-97 359.8 231 83.5
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 6.7e-88 327.8 231 77.5
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 9.7e-87 323.9 231 74.9
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 1.7e-86 323.2 231 77.1
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 3.7e-86 322.0 231 77.1
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 2.4e-85 319.3 230 76.1
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 7.0e-85 317.8 231 76.2
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.2e-84 317.0 230 75.2
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 3.5e-84 315.5 231 74.5
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 3.2e-82 308.9 231 71.9
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.8e-77 293.1 235 68.1
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 2.2e-62 243.0 222 59.5
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 3.5e-60 235.7 196 63.3
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 3.9e-59 232.3 195 63.1
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 3.9e-59 232.3 194 63.9
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.1e-58 230.7 194 61.9
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.5e-58 230.3 224 58.0
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 4.3e-58 228.8 192 62.5
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 5.6e-58 228.4 193 62.2
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 9.5e-58 227.6 195 61.5
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 1.2e-57 227.3 197 62.4
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 2.1e-57 226.5 198 60.1
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 2.1e-57 226.5 192 62.5
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.8e-57 226.1 199 61.3
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 6.1e-57 224.9 194 61.3
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 6.1e-57 224.9 202 58.4
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 8.0e-57 224.6 230 52.6
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 1.8e-56 223.4 197 59.4
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 1.8e-56 223.4 195 60.0
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.8e-56 223.4 192 61.5
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.3e-56 223.0 194 60.8
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 3.1e-56 222.6 196 58.7
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 5.2e-56 221.9 194 59.3
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 6.8e-56 221.5 194 61.9
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 8.9e-56 221.1 196 58.7
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 8.9e-56 221.1 197 59.9
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 8.9e-56 221.1 194 58.8
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.2e-55 220.7 193 59.6
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.0e-55 219.9 197 59.4
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 2.6e-55 219.5 197 57.9
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 3.4e-55 219.2 193 60.1
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 5.8e-55 218.4 196 57.7
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 5.8e-55 218.4 196 57.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 5.8e-55 218.4 205 55.6
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 9.8e-55 217.6 203 58.1
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.3e-54 217.2 197 59.4
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.3e-54 217.2 192 59.4
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.7e-54 216.9 196 56.6
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 2.2e-54 216.5 197 59.9
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 2.2e-54 216.5 194 57.7
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 4.9e-54 215.3 202 59.9
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 6.4e-54 214.9 188 59.6
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 6.4e-54 214.9 192 60.4
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 6.4e-54 214.9 198 59.1
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 1.1e-53 214.2 197 59.4
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.1e-53 214.2 197 58.4
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.4e-53 213.8 198 59.6
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.4e-53 213.8 197 58.4
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 3.2e-53 212.6 204 56.9
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 5.4e-53 211.8 190 59.5
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 7.0e-53 211.5 206 57.3
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 7.0e-53 211.5 197 57.4
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.2e-52 210.7 176 60.8
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 2.3e-51 206.5 204 54.4
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 3.3e-50 202.6 193 56.5
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 5.6e-50 201.8 196 57.1
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.6e-49 200.3 163 59.5
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 4.7e-49 198.7 191 56.0
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.4e-48 197.2 195 54.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.4e-48 197.2 195 55.4
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 3.1e-48 196.1 169 64.5
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 9.8e-47 191.0 167 61.1
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 2.9e-46 189.5 165 61.2
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.9e-46 188.7 262 46.9
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.1e-45 187.6 170 61.2
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 2.1e-44 183.3 195 52.3
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 6.0e-44 181.8 166 56.0
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 6.0e-44 181.8 171 57.3
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 6.0e-44 181.8 182 53.8
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 7.8e-44 181.4 198 51.0
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 6.6e-43 178.3 182 52.7
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 5.6e-42 175.3 200 50.0
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 6.2e-41 171.8 151 62.9
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.4e-40 170.6 195 49.2
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 9.9e-39 164.5 191 47.1
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 6.4e-38 161.8 140 60.0
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 7.8e-36 154.8 132 58.3
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.9e-35 152.5 182 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 1.1e-34 151.0 171 46.8
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 1.5e-34 150.6 192 46.4
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 7.3e-34 148.3 119 63.0
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 4.7e-33 145.6 185 44.3
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.1e-29 131.7 133 53.4
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 9.2e-29 131.3 169 48.5
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 4.8e-25 119.0 103 57.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 9.9e-23 111.3 89 62.9
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 4.2e-21 105.9 80 63.8
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.3e-19 100.1 111 48.6
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.1e-18 97.8 234 32.1
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 2.1e-17 93.6 73 60.3
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 4.8e-17 92.4 113 45.1
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 4.3e-10 69.3 89 49.4


User provided reference genes

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