Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 2.4e-174 615.5 338 100.0
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.7e-160 567.8 340 95.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.1e-139 500.4 342 83.9
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 1.3e-135 486.9 346 83.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.7e-127 459.9 339 81.1
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 2.2e-127 459.5 349 79.9
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 2.2e-127 459.5 349 79.9
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.4e-126 456.8 348 79.9
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.0e-125 453.0 351 80.1
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.1e-123 447.2 353 78.5
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 1.2e-122 443.7 351 79.2
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 1.2e-122 443.7 351 79.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 3.6e-82 309.3 346 61.0
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.8e-68 263.8 371 56.1
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 4.3e-51 206.1 332 47.0
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 4.3e-51 206.1 332 47.0
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 6.3e-50 202.2 339 47.2
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.4e-49 201.1 329 47.4
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.4e-49 201.1 336 45.5
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.8e-49 200.7 341 45.5
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.9e-47 193.4 327 48.0
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.9e-47 193.4 332 46.1
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 2.9e-47 193.4 333 44.7
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.8e-47 193.0 333 46.2
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 5.0e-47 192.6 277 50.9
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 5.0e-47 192.6 305 49.2
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.5e-47 192.2 303 50.2
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.5e-47 192.2 305 47.9
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.1e-46 191.4 332 46.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 7.2e-46 188.7 327 46.2
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.2e-45 188.0 307 46.6
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.6e-45 187.6 336 45.5
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.1e-45 187.2 332 44.6
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 2.7e-45 186.8 334 45.8
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.7e-45 186.8 338 46.7
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.6e-45 186.0 352 44.6
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 6.1e-45 185.7 328 48.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.1e-45 185.7 345 42.3
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 6.1e-45 185.7 333 44.7
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 7.9e-45 185.3 302 46.0
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.9e-44 183.0 325 46.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.1e-43 181.4 337 40.7
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.5e-43 181.0 309 44.3
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.4e-43 179.5 340 44.4
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 7.4e-43 178.7 342 44.7
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 7.4e-43 178.7 325 42.2
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.2e-42 177.2 340 45.0
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.2e-42 177.2 337 43.3
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.8e-42 176.8 337 43.6
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.8e-42 176.8 331 42.0
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.8e-42 176.8 332 44.9
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 3.7e-42 176.4 324 44.8
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 3.7e-42 176.4 321 43.3
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.8e-42 176.0 307 44.0
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.3e-42 175.6 307 44.0
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 8.2e-42 175.3 366 40.2
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.4e-41 174.5 358 41.6
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 3.1e-41 173.3 343 42.0
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 4.1e-41 172.9 362 42.0
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 4.1e-41 172.9 324 41.4
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 6.9e-41 172.2 277 48.7
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.1e-41 171.8 333 45.0
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.1e-41 171.8 333 45.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 9.1e-41 171.8 313 43.5
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.5e-40 171.0 312 44.6
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.5e-40 171.0 327 43.4
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.5e-40 171.0 308 44.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.5e-40 171.0 341 43.1
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-40 170.2 305 44.3
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.9e-40 169.1 333 44.4
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 7.7e-40 168.7 350 42.9
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.7e-39 167.5 332 41.9
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 1.4e-38 164.5 330 43.6
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.4e-38 164.5 333 42.9
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.9e-38 164.1 326 42.9
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 3.2e-38 163.3 321 42.1
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.2e-38 162.9 321 41.1
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 4.2e-38 162.9 336 40.2
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.5e-38 162.5 328 45.7
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 7.2e-38 162.2 344 41.6
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.2e-37 161.4 366 40.2
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.1e-37 160.6 324 42.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.7e-37 160.2 332 42.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.3e-36 157.1 323 42.4
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 8.8e-36 155.2 344 39.0
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 1.5e-35 154.5 326 42.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 2.6e-35 153.7 314 41.1
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.7e-35 152.5 315 39.4
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 7.4e-35 152.1 335 42.7
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.3e-34 151.4 270 44.8
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.7e-34 151.0 262 42.7
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.8e-34 150.2 262 44.7
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 8.2e-34 148.7 290 41.7
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.1e-33 148.3 306 41.8
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 2.4e-33 147.1 365 40.0
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.0e-32 144.1 362 37.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 2.6e-32 143.7 370 37.8
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 4.5e-32 142.9 305 41.3
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 4.5e-32 142.9 348 39.1
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.0e-31 141.7 313 40.9
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.9e-31 140.2 300 39.0
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.9e-31 140.2 344 35.8
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.9e-31 140.2 318 39.0
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.8e-31 139.8 344 35.8
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 5.0e-31 139.4 335 36.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 6.5e-31 139.0 304 40.5
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.5e-30 137.9 394 35.3
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.5e-30 137.1 272 41.9
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 9.4e-30 135.2 313 40.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.2e-29 134.8 301 38.9
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.7e-29 133.7 266 40.2
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 6.1e-29 132.5 312 40.1
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.3e-28 130.6 322 39.1
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.3e-28 130.6 283 38.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.3e-28 130.6 302 39.4
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.0e-28 130.2 339 38.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.2e-28 129.4 338 36.1
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 8.8e-28 128.6 308 39.0
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 5.7e-27 125.9 307 38.1
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.5e-27 125.6 328 38.7
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 7.5e-27 125.6 341 37.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.7e-26 124.4 325 37.8
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.4e-25 121.3 208 42.3
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.1e-25 120.2 309 38.5
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 5.3e-25 119.4 321 38.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.0e-24 117.5 317 39.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.0e-24 117.5 257 40.1
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 2.7e-24 117.1 332 33.4
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.5e-24 116.7 175 46.3
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.3e-23 114.8 305 34.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.3e-23 114.8 271 37.6
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.9e-23 113.6 320 36.6
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 5.0e-23 112.8 220 43.6
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.5e-23 112.1 334 35.6
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 2.5e-22 110.5 267 35.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.4e-20 104.8 223 41.3
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.3e-20 104.0 326 34.4
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.8e-20 102.4 239 37.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-19 100.9 254 37.4
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.0e-19 100.9 254 37.4
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 5.7e-19 99.4 310 33.9
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 7.5e-19 99.0 243 42.8
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.2e-18 97.4 148 49.3
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.8e-17 94.4 256 38.3
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.1e-17 93.6 117 49.6
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.3e-15 88.2 324 29.6
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.2e-13 81.6 212 37.7
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 2.1e-13 80.9 297 32.7
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 6.8e-12 75.9 335 32.8
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.9e-12 75.5 111 47.7
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.3e-10 71.6 323 30.7
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 2.2e-10 70.9 353 28.0
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 6.3e-10 69.3 257 33.5
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 8.3e-10 68.9 339 27.4
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 4.1e-09 66.6 72 55.6
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 5.4e-09 66.2 355 26.2
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 5.4e-09 66.2 336 30.1
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.2e-08 65.1 149 36.2
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.6e-08 64.7 366 26.2
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.0e-08 64.3 369 27.4
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 7.8e-08 62.4 363 26.2
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.3e-07 61.6 344 27.9
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.7e-07 61.2 314 29.9
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 2.3e-07 60.8 320 29.4
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 2.9e-07 60.5 306 25.5
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 2.9e-07 60.5 270 28.9
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.8e-07 60.1 98 46.9
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 6.6e-07 59.3 341 26.4
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.1e-06 58.5 141 39.7
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.5e-06 58.2 320 27.5
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 1.5e-06 58.2 292 27.7
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.9e-06 57.8 86 43.0
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 2.5e-06 57.4 75 53.3
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.5e-06 57.4 327 27.8
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 3.3e-06 57.0 60 56.7
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 3.3e-06 57.0 378 27.8
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 4.3e-06 56.6 377 27.9
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 4.3e-06 56.6 345 26.1
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 5.6e-06 56.2 337 27.0
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 7.3e-06 55.8 342 27.2
Zm00001eb038100 Zea mays HOM05D004504 ORTHO05D005324 7.3e-06 55.8 130 40.8
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 9.5e-06 55.5 345 26.1


User provided reference genes

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