Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 0.0e+00 1438.3 807 100.0
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 0.0e+00 1192.2 838 79.4
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 0.0e+00 1099.0 836 75.2
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.0e-279 966.8 854 67.7
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 3.0e-276 955.3 831 65.7
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.6e-272 942.2 851 65.8
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 9.1e-257 890.6 855 63.6
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 2.9e-255 885.6 854 62.9
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.6e-253 879.8 856 63.2
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 4.7e-253 878.2 852 62.6
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 4.0e-252 875.2 854 62.4
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 8.0e-237 824.3 847 60.1
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.8e-164 583.9 1042 41.9
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.5e-163 580.9 875 45.5
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.1e-92 345.5 885 35.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.6e-88 331.6 1090 29.4
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.6e-86 324.3 1093 30.7
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.3e-85 322.0 1021 30.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.1e-84 318.9 1088 30.6
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 9.3e-84 315.8 969 30.9
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 7.9e-83 312.8 1090 29.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.9e-81 308.1 1085 30.7
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 5.6e-81 306.6 957 31.2
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 9.6e-81 305.8 1085 29.6
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.1e-80 304.7 1087 29.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.8e-80 304.3 960 29.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 3.7e-80 303.9 1089 31.0
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.2e-80 303.1 1083 30.7
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 3.1e-79 300.8 962 29.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 3.1e-79 300.8 1087 28.2
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 5.3e-79 300.1 1089 28.6
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 4.5e-78 297.0 978 29.2
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.4e-76 292.0 1077 28.0
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.4e-76 292.0 1088 28.5
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.0e-75 286.6 1081 27.9
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 3.9e-74 283.9 963 29.5
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.9e-74 283.9 1091 28.2
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 6.7e-74 283.1 1022 29.2
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 8.7e-74 282.7 1081 29.0
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.4e-71 274.6 1017 28.6
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.1e-71 274.2 1034 28.6
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.6e-70 271.2 1073 28.2
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.2e-68 264.2 999 28.1
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 4.6e-67 260.4 1003 27.2
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 4.6e-67 260.4 1036 28.0
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.9e-66 257.3 1059 27.1
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 3.9e-66 257.3 1052 28.8
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 6.7e-66 256.5 1020 30.3
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.7e-65 252.7 878 30.5
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.7e-64 250.8 971 28.8
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 8.2e-64 249.6 933 28.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.8e-63 248.4 1055 28.3
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 3.1e-63 247.7 1023 26.7
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 3.4e-62 244.2 876 29.5
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.7e-61 241.9 1019 26.6
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.8e-61 240.7 1073 26.3
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 6.5e-61 240.0 1029 28.8
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.4e-60 238.8 1011 27.5
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 3.2e-60 237.7 1047 26.6
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 9.4e-60 236.1 1047 27.7
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.1e-59 235.0 1022 27.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 2.1e-59 235.0 1060 26.2
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 3.6e-59 234.2 1016 26.5
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 6.1e-59 233.4 1088 26.8
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.4e-58 232.3 1029 26.9
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.8e-58 231.9 1028 27.5
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 3.0e-58 231.1 917 29.9
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 5.1e-58 230.3 1059 27.1
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.3e-57 227.6 1084 25.5
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 2.8e-56 224.6 1089 25.3
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 6.3e-56 223.4 855 28.0
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 1.1e-55 222.6 1064 25.8
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.4e-55 222.2 1088 25.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.4e-55 222.2 1065 24.9
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.1e-55 221.1 870 29.0
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 4.5e-54 217.2 1064 25.3
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.3e-53 215.7 1046 25.8
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.2e-53 214.9 1090 23.9
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 3.8e-53 214.2 383 38.6
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 2.5e-52 211.5 918 27.8
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 9.4e-52 209.5 1053 25.8
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.6e-51 208.8 1015 25.1
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.4e-50 205.7 891 27.3
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.1e-49 202.6 969 25.7
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 4.8e-48 197.2 1074 25.9
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.1e-47 196.1 915 26.1
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.4e-47 194.9 404 37.9
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.4e-47 194.9 472 36.0
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 3.5e-46 191.0 1092 26.6
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 3.5e-46 191.0 1015 25.0
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 4.5e-46 190.7 1063 24.3
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 1.7e-45 188.7 438 35.2
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 2.9e-45 188.0 827 25.8
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 8.5e-45 186.4 1004 25.5
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.1e-44 186.0 935 25.7
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 1.4e-44 185.7 1016 25.4
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 2.7e-43 181.4 802 28.9
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 3.0e-42 177.9 192 48.4
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.1e-39 167.9 343 36.7
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 1.3e-37 162.5 194 45.4
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.0e-34 152.9 1045 23.3
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 3.0e-34 151.4 440 33.6
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 3.1e-31 141.4 443 30.5
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.0e-29 136.3 120 55.0
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.2e-28 131.0 330 29.1
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 5.5e-28 130.6 423 33.8
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 3.4e-25 121.3 276 33.7
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 7.7e-22 110.2 154 42.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 9.8e-17 93.2 951 24.5
C04p25240 Brassica napus HOM05D006788 ORTHO05D008265 1.2e-14 86.3 139 40.3
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 2.7e-14 85.1 173 32.4
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.5e-12 78.6 181 29.3
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 2.5e-12 78.6 987 21.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 9.5e-12 76.6 171 31.0
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 6.1e-11 73.9 172 26.7
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.1e-11 73.9 212 29.7
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.1e-11 73.9 182 30.2
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 1.2e-09 69.7 172 29.1
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-09 69.7 166 27.7
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.2e-09 69.7 305 23.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.2e-09 69.7 193 28.5
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.0e-09 68.9 222 30.2
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.0e-09 68.9 165 30.3
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.6e-09 68.6 166 28.3
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 2.6e-09 68.6 813 21.8
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.4e-09 68.2 171 29.8
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.4e-09 67.8 801 20.1
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 9.8e-09 66.6 182 27.5
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.3e-08 66.2 385 23.4
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.7e-08 64.7 729 21.3
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 3.7e-08 64.7 834 19.5
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 4.9e-08 64.3 214 28.5
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.4e-08 63.9 804 21.0
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 8.3e-08 63.5 167 28.1
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.1e-07 63.2 181 29.3
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.4e-07 62.8 216 26.9
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.4e-07 62.8 706 21.2
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.4e-07 62.8 799 20.8
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.2e-07 61.6 264 25.0
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.2e-07 61.6 168 28.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.1e-07 61.2 242 25.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 5.4e-07 60.8 172 29.1
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.6e-06 59.3 179 26.8
SEGI_09114 Sequoiadendron giganteum HOM05D006788 ORTHO05D008265 3.5e-06 58.2 133 24.1
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.0e-06 57.4 123 34.1
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.0e-06 57.4 793 21.3
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 6.0e-06 57.4 254 22.8
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.0e-06 57.4 166 28.9


User provided reference genes

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