Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 5.2e-102 374.4 191 100.0
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 1.5e-96 356.3 189 94.7
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.7e-89 332.8 191 89.0
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 1.1e-88 330.1 188 89.9
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 6.6e-81 304.3 191 82.2
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 3.4e-77 292.0 192 81.8
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 3.4e-77 292.0 192 81.8
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 9.9e-77 290.4 192 81.2
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 3.8e-76 288.5 191 80.1
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 3.8e-76 288.5 193 80.8
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 7.8e-74 280.8 192 80.2
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 7.8e-74 280.8 192 80.2
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 5.1e-49 198.4 130 78.5
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 2.0e-45 186.4 172 60.5
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 7.2e-43 177.9 195 52.3
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 1.3e-41 173.7 185 51.9
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 2.3e-41 172.9 185 51.9
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 6.7e-41 171.4 192 51.6
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 9.7e-40 167.5 196 49.0
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 1.3e-39 167.2 180 51.7
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 6.3e-39 164.9 193 49.2
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 6.3e-39 164.9 193 49.2
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 8.2e-39 164.5 192 49.0
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.1e-38 164.1 175 49.7
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 9.1e-38 161.0 189 49.2
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 1.2e-37 160.6 193 47.2
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.5e-37 160.2 187 48.1
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 7.7e-37 157.9 194 44.8
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.0e-36 157.5 196 44.9
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 1.7e-36 156.8 195 46.7
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 1.7e-36 156.8 197 45.7
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 2.2e-36 156.4 192 48.4
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 5.0e-36 155.2 195 47.7
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.1e-35 154.1 193 47.7
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 1.1e-35 154.1 194 46.4
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 1.1e-35 154.1 187 47.1
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 1.9e-35 153.3 189 46.0
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 1.9e-35 153.3 190 45.8
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 1.9e-35 153.3 184 49.5
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 2.5e-35 152.9 187 47.1
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 2.5e-35 152.9 200 48.0
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 4.2e-35 152.1 188 48.4
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 4.2e-35 152.1 190 45.8
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 5.5e-35 151.8 192 44.3
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 5.5e-35 151.8 199 47.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 7.2e-35 151.4 191 47.6
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 1.2e-34 150.6 188 46.3
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 1.2e-34 150.6 195 43.1
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.2e-34 150.6 192 45.8
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 1.6e-34 150.2 184 42.9
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 2.7e-34 149.4 187 42.8
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 2.7e-34 149.4 200 45.0
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 4.6e-34 148.7 200 45.0
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 7.9e-34 147.9 173 51.4
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 7.9e-34 147.9 196 44.9
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 3.9e-33 145.6 190 48.4
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 5.1e-33 145.2 200 42.5
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.7e-33 144.8 188 46.8
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 8.8e-33 144.4 195 43.6
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.0e-32 143.3 149 50.3
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 2.6e-32 142.9 187 43.9
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 2.6e-32 142.9 167 46.1
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 3.3e-32 142.5 185 42.7
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 1.3e-31 140.6 192 44.8
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.3e-31 140.6 187 44.9
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 1.7e-31 140.2 185 47.6
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 2.2e-31 139.8 197 44.2
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 2.8e-31 139.4 189 43.9
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 2.8e-31 139.4 172 46.5
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 4.8e-31 138.7 190 44.7
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 1.8e-30 136.7 152 44.1
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 5.3e-30 135.2 188 46.8
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 5.3e-30 135.2 183 45.9
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 6.9e-30 134.8 183 45.9
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 1.5e-29 133.7 167 43.7
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 1.0e-28 131.0 183 43.2
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 8.5e-28 127.9 186 44.1
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 7.2e-27 124.8 123 52.8
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.0e-25 120.9 187 41.2
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 3.9e-25 119.0 209 39.2
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 8.8e-25 117.9 186 40.3
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 8.5e-20 101.3 197 37.1
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 3.3e-16 89.4 193 36.8
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 7.2e-11 71.6 176 33.5
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 2.6e-08 63.2 102 37.3
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 2.6e-08 63.2 102 37.3
SMO111G0080 Selaginella moellendorffii HOM05D001508 ORTHO05D001381 3.4e-08 62.8 148 29.7
Glyma.03G147800 Glycine max HOM05D000180 ORTHO05D000099 5.7e-08 62.0 120 33.3
SEGI_32439 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 5.7e-08 62.0 104 32.7
Phvul.001G145600 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 7.5e-08 61.6 125 35.2
Psat3g067480 Pisum sativum HOM05D000180 ORTHO05D000099 1.3e-07 60.8 117 32.5
arahy.Tifrunner.gnm1.ann1.G07C2M Arachis hypogaea HOM05D000180 ORTHO05D000099 1.7e-07 60.5 121 32.2
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 2.2e-07 60.1 61 44.3
Phvul.001G145900 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.2e-07 60.1 117 32.5
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 2.8e-07 59.7 88 34.1
Phvul.001G145800 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.8e-07 59.7 117 30.8
arahy.Tifrunner.gnm1.ann1.FTV255 Arachis hypogaea HOM05D000180 ORTHO05D000099 3.7e-07 59.3 101 37.6
THA.LOC104819119 Tarenaya hassleriana HOM05D000180 ORTHO05D000099 3.7e-07 59.3 121 33.9
arahy.Tifrunner.gnm1.ann1.U3CTV6 Arachis hypogaea HOM05D000180 ORTHO05D000099 4.8e-07 58.9 123 33.3
Psat7g248720 Pisum sativum HOM05D000180 ORTHO05D000099 4.8e-07 58.9 88 36.4
VMungo1383G1447 Vigna mungo HOM05D000180 ORTHO05D000099 4.8e-07 58.9 107 33.6
VMungo1383G3735 Vigna mungo HOM05D000180 ORTHO05D000099 4.8e-07 58.9 125 33.6
Glyma.19G151200 Glycine max HOM05D000180 ORTHO05D000099 6.3e-07 58.5 125 34.4
Sc16g0012030 Simmondsia chinensis HOM05D000180 ORTHO05D000099 6.3e-07 58.5 127 33.1
Ciclev10016848m.g Citrus clementina HOM05D000180 ORTHO05D000099 8.3e-07 58.2 101 34.7
Ah.12g065140 Amaranthus hybridus HOM05D000180 ORTHO05D000099 1.1e-06 57.8 106 32.1
Gohir.A13G012800 Gossypium hirsutum HOM05D000180 ORTHO05D000099 1.1e-06 57.8 127 32.3
Glyma.19G151100 Glycine max HOM05D000180 ORTHO05D000099 1.4e-06 57.4 125 33.6
Glyma.03G147700 Glycine max HOM05D000180 ORTHO05D000099 1.8e-06 57.0 125 33.6
Lj1g0027716 Lotus japonicus HOM05D000180 ORTHO05D000099 1.8e-06 57.0 107 31.8
VMungo1383G1508 Vigna mungo HOM05D000180 ORTHO05D000099 1.8e-06 57.0 107 32.7
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 2.4e-06 56.6 101 30.7
Lj9C645T25 Lonicera japonica HOM05D000180 ORTHO05D000099 2.4e-06 56.6 116 33.6
Phvul.001G145700 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.4e-06 56.6 118 30.5
Lj9C645T24 Lonicera japonica HOM05D000180 ORTHO05D000099 3.1e-06 56.2 98 35.7
Medtr4g013335 Medicago truncatula HOM05D000180 ORTHO05D000099 4.1e-06 55.8 99 39.4
Peaxi162Scf00411g00041 Petunia axillaris HOM05D000970 ORTHO05D000788 4.1e-06 55.8 100 31.0
QL07p024903 Quercus lobata HOM05D000180 ORTHO05D000099 4.1e-06 55.8 101 34.7
TPR.G13355 Trifolium pratense HOM05D000180 ORTHO05D000099 4.1e-06 55.8 100 36.0
ATR0810G102 Amborella trichopoda HOM05D000180 ORTHO05D000099 5.4e-06 55.5 103 31.1
Ca_03578_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 5.4e-06 55.5 107 33.6
FvH4_6g21711 Fragaria vesca HOM05D000180 ORTHO05D000099 5.4e-06 55.5 101 33.7
FAN14G4148 Fragaria x ananassa HOM05D000180 ORTHO05D000099 5.4e-06 55.5 101 33.7
Gorai.013G015000 Gossypium raimondii HOM05D000180 ORTHO05D000099 5.4e-06 55.5 127 31.5
MBI09_g32117_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 5.4e-06 55.5 101 32.7
MBI09_g39819_MAGBIO Magnolia biondii HOM05D000180 ORTHO05D000099 5.4e-06 55.5 101 32.7
Medtr7g093830 Medicago truncatula HOM05D000180 ORTHO05D000099 5.4e-06 55.5 100 36.0
Os11g0179700 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 5.4e-06 55.5 99 34.3
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 5.4e-06 55.5 84 35.7
Solyc02g082740.1 Solanum lycopersicum HOM05D007916 ORTHO05D010074 5.4e-06 55.5 108 33.3
Aqoxy2G00295 Aquilegia oxysepala HOM05D000180 ORTHO05D000099 7.0e-06 55.1 104 32.7
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 7.0e-06 55.1 87 37.9
CiPaw.13G010600 Carya illinoinensis HOM05D000180 ORTHO05D000099 7.0e-06 55.1 118 34.7
Ca_08545_v3 Cicer arietinum L. HOM05D000180 ORTHO05D000099 7.0e-06 55.1 125 34.4
Migut.J01187 Erythranthe guttata HOM05D000180 ORTHO05D000099 7.0e-06 55.1 99 34.3
Eucgr.A02220 Eucalyptus grandis HOM05D000180 ORTHO05D000099 7.0e-06 55.1 78 42.3
Gohir.D13G014000 Gossypium hirsutum HOM05D000180 ORTHO05D000099 7.0e-06 55.1 127 31.5
Manes.04G164300 Manihot esculenta HOM05D000180 ORTHO05D000099 7.0e-06 55.1 101 32.7
Medtr7g093820 Medicago truncatula HOM05D000180 ORTHO05D000099 7.0e-06 55.1 100 36.0
PGR004G1159 Punica granatum HOM05D000180 ORTHO05D000099 7.0e-06 55.1 97 34.0
QL04p013650 Quercus lobata HOM05D000180 ORTHO05D000099 7.0e-06 55.1 102 35.3
Sopen02g027500 Solanum pennellii HOM05D007916 ORTHO05D010074 7.0e-06 55.1 108 33.3
Thhalv10008857m.g Eutrema salsugineum HOM05D000180 ORTHO05D000099 9.1e-06 54.7 105 33.3
MBI14_g44801_MAGBIO Magnolia biondii HOM05D000970 ORTHO05D000788 9.1e-06 54.7 101 31.7
Manes.08G041400 Manihot esculenta HOM05D000180 ORTHO05D000099 9.1e-06 54.7 110 32.7
Medtr1g054525 Medicago truncatula HOM05D000180 ORTHO05D000099 9.1e-06 54.7 96 34.4
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 9.1e-06 54.7 124 32.3
SalBow6G5590 Salvia bowleyana HOM05D000180 ORTHO05D000099 9.1e-06 54.7 79 40.5
TAR633G2755 Trochodendron aralioides HOM05D000180 ORTHO05D000099 9.1e-06 54.7 101 30.7


User provided reference genes

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