Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 7.8e-134 480.7 289 100.0
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 8.4e-120 434.1 292 90.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.3e-106 388.3 294 82.7
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 6.9e-90 334.7 294 69.4
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 6.9e-90 334.7 294 69.4
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.8e-88 328.9 294 70.4
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 3.9e-85 318.9 296 68.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.1e-84 317.4 298 72.8
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 2.0e-84 316.6 296 68.2
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 6.7e-77 291.6 295 62.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 9.4e-63 244.6 225 73.3
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.5e-44 184.1 321 51.1
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.4e-37 161.0 289 50.2
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.4e-36 156.0 297 42.4
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 5.4e-34 149.1 298 43.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.0e-34 148.7 296 42.2
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 2.7e-33 146.7 300 42.7
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 3.5e-33 146.4 301 42.5
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 3.9e-32 142.9 281 42.3
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 6.6e-32 142.1 291 46.4
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 2.5e-31 140.2 180 50.6
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 3.3e-31 139.8 177 50.8
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.3e-31 139.4 292 38.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.3e-31 139.4 292 38.0
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.6e-31 139.0 299 43.8
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 5.6e-31 139.0 280 41.4
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.2e-30 137.9 171 50.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.6e-30 137.5 177 54.8
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.6e-30 137.5 292 37.7
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 8.0e-30 135.2 292 38.0
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 1.1e-29 134.8 179 49.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.4e-29 134.4 176 53.4
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.8e-29 134.0 171 53.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.0e-29 132.9 171 49.7
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.0e-29 132.9 171 49.7
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 5.2e-29 132.5 180 48.9
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 6.8e-29 132.1 185 48.1
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.2e-28 131.3 180 48.3
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 2.6e-28 130.2 185 55.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 3.4e-28 129.8 314 37.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 3.4e-28 129.8 179 49.7
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 3.4e-28 129.8 173 51.4
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.4e-28 129.8 180 50.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.4e-28 129.8 180 50.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.4e-28 129.8 174 58.6
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 5.8e-28 129.0 176 56.2
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 7.5e-28 128.6 176 47.2
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.8e-28 128.3 179 50.8
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.3e-27 127.9 163 54.0
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 2.2e-27 127.1 182 47.8
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 3.7e-27 126.3 177 55.4
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.9e-27 125.9 294 39.5
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 4.9e-27 125.9 168 51.2
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.4e-26 124.4 174 49.4
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 1.4e-26 124.4 176 48.9
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 3.2e-26 123.2 177 46.9
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.4e-26 122.5 262 37.4
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.4e-26 122.5 262 37.4
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.1e-26 122.1 173 48.6
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 7.1e-26 122.1 180 48.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.2e-25 121.3 180 50.6
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.1e-25 120.6 180 47.8
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.1e-25 120.6 185 45.9
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 2.7e-25 120.2 176 47.7
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 3.5e-25 119.8 177 53.1
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 3.5e-25 119.8 177 53.1
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 4.6e-25 119.4 240 39.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 7.8e-25 118.6 177 45.8
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.0e-24 116.7 167 46.1
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.6e-24 115.5 190 44.7
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 8.6e-24 115.2 172 46.5
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-23 114.8 179 49.7
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.9e-23 114.0 171 46.2
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 3.3e-23 113.2 184 46.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.2e-22 111.3 185 44.9
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.1e-22 110.5 178 49.4
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 2.8e-22 110.2 182 42.9
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 4.7e-22 109.4 183 44.8
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.2e-22 109.0 178 45.5
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 6.2e-22 109.0 180 45.6
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 8.1e-22 108.6 179 44.1
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.1e-21 108.2 183 49.2
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.4e-21 107.8 178 52.2
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.8e-21 107.5 183 42.1
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 4.0e-21 106.3 191 40.3
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 4.0e-21 106.3 174 43.1
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 5.2e-21 105.9 169 43.2
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 8.9e-21 105.1 168 48.8
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-20 103.6 178 43.8
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-20 103.6 178 43.8
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.6e-20 103.6 162 45.1
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 5.8e-20 102.4 183 44.3
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 7.6e-20 102.1 168 42.9
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.6e-20 102.1 178 40.4
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 9.9e-20 101.7 184 44.6
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.7e-19 100.9 184 42.9
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.7e-19 100.9 181 46.4
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.9e-19 100.1 183 39.3
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 2.9e-19 100.1 189 42.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 3.7e-19 99.8 185 45.4
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.7e-19 99.8 178 43.3
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.9e-19 99.4 186 44.1
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.3e-19 98.6 176 50.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.1e-18 98.2 148 48.6
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 1.9e-18 97.4 164 41.5
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.9e-18 97.4 182 42.3
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.4e-18 97.1 179 41.9
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 5.4e-18 95.9 179 39.1
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.1e-18 95.5 175 40.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 2.1e-17 94.0 183 40.4
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 3.5e-17 93.2 174 40.8
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 6.0e-17 92.4 165 39.4
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.3e-16 91.3 178 39.3
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.7e-16 90.9 170 41.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.3e-15 86.3 174 37.4
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 9.6e-15 85.1 168 40.5
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.2e-12 78.2 161 37.3
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 4.4e-12 76.3 125 40.8
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 6.4e-11 72.4 173 35.8
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 2.4e-10 70.5 150 40.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.6e-09 67.8 182 37.4
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.1e-09 67.4 168 33.3
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 6.0e-09 65.9 102 51.0
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.0e-09 65.9 101 46.5
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 6.0e-09 65.9 101 46.5
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.7e-08 64.3 101 46.5
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.7e-08 64.3 90 44.4
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-08 63.5 98 43.9
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-08 63.5 98 43.9
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-08 63.5 98 43.9
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.1e-08 62.8 91 45.1
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.9e-07 60.8 184 30.4
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 2.5e-07 60.5 106 39.6
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.3e-07 59.7 47 66.0
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 7.3e-07 58.9 113 38.1
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 7.3e-07 58.9 178 30.3
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 9.6e-07 58.5 58 51.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-06 58.2 103 45.6
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.3e-06 58.2 103 45.6
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.3e-06 58.2 103 45.6
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 1.3e-06 58.2 42 59.5
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.3e-06 58.2 58 55.2
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.1e-06 57.4 178 29.8
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 8.1e-06 55.5 38 68.4


User provided reference genes

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