Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.5e-36 153.3 76 100.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 3.1e-29 131.3 76 88.2
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 9.8e-28 126.3 76 80.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 9.8e-28 126.3 76 82.9
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-27 125.9 76 80.3
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.1e-26 120.9 76 80.3
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-25 119.4 76 80.3
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.3e-24 115.2 72 84.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-23 112.5 66 81.8
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.3e-23 111.3 74 77.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.1e-22 108.6 66 80.3
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 3.6e-22 107.8 66 78.8
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 6.2e-22 107.1 66 77.3
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 6.2e-22 107.1 66 77.3
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 8.1e-22 106.7 66 78.8
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.1e-21 104.8 76 67.1
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.1e-21 104.8 76 65.8
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 8.9e-21 103.2 66 74.2
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 8.9e-21 103.2 76 65.8
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 8.9e-21 103.2 76 65.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.0e-20 102.1 53 84.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.6e-20 101.7 64 78.1
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.6e-20 101.7 77 68.8
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.6e-20 101.7 77 68.8
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 3.4e-20 101.3 66 69.7
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.4e-20 101.3 78 70.5
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.4e-20 101.3 77 66.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.4e-20 100.9 76 63.2
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 5.8e-20 100.5 76 64.5
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 7.5e-20 100.1 76 63.2
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 9.9e-20 99.8 76 64.5
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.9e-20 99.8 77 66.2
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 9.9e-20 99.8 76 63.2
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.3e-19 99.4 76 63.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.3e-19 99.4 77 63.6
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.7e-19 99.0 76 65.8
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.7e-19 99.0 76 63.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 2.2e-19 98.6 74 64.9
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.2e-19 98.6 77 66.2
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.2e-19 98.6 78 69.2
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.2e-19 98.6 67 73.1
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-19 98.2 71 70.4
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 3.7e-19 97.8 66 62.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 3.7e-19 97.8 76 61.8
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.7e-19 97.8 76 61.8
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 4.9e-19 97.4 76 65.8
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 4.9e-19 97.4 76 63.2
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 4.9e-19 97.4 76 63.2
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 4.9e-19 97.4 76 63.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 6.4e-19 97.1 79 64.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 6.4e-19 97.1 76 61.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 8.3e-19 96.7 66 68.2
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 8.3e-19 96.7 76 63.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 8.3e-19 96.7 76 61.8
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-18 96.3 71 67.6
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.1e-18 96.3 77 64.9
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.1e-18 96.3 75 64.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.1e-18 96.3 76 60.5
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-18 95.9 65 73.8
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.4e-18 95.9 66 68.2
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 1.9e-18 95.5 78 65.4
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.9e-18 95.5 77 64.9
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.4e-18 95.1 49 85.7
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.4e-18 95.1 66 63.6
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 3.2e-18 94.7 76 60.5
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 3.2e-18 94.7 76 60.5
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.1e-18 94.4 67 70.1
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 4.1e-18 94.4 78 67.9
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.1e-18 94.4 74 58.1
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.4e-18 94.0 76 61.8
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.1e-18 93.6 62 69.4
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 7.1e-18 93.6 76 59.2
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 9.2e-18 93.2 76 60.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.6e-17 92.4 74 58.1
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.6e-17 92.4 76 64.5
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 2.1e-17 92.0 78 64.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.5e-17 91.3 74 60.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.6e-17 90.9 82 57.3
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 4.6e-17 90.9 76 63.2
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.6e-17 90.9 67 64.2
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.6e-17 90.9 74 55.4
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-17 90.5 76 63.2
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-17 90.5 76 63.2
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-17 90.5 76 63.2
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 6.0e-17 90.5 76 63.2
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 6.0e-17 90.5 76 63.2
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 6.0e-17 90.5 81 59.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.8e-17 90.1 50 80.0
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.8e-17 90.1 79 60.8
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 7.8e-17 90.1 66 63.6
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.0e-16 89.7 66 60.6
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.3e-16 89.4 79 59.5
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.3e-16 89.4 81 59.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 2.3e-16 88.6 78 65.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.3e-16 88.6 81 59.3
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 5.1e-16 87.4 76 60.5
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 5.1e-16 87.4 70 60.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 6.6e-16 87.0 48 72.9
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 8.6e-16 86.7 71 63.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.1e-15 86.3 80 56.2
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.5e-15 85.9 62 62.9
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.9e-15 85.5 62 59.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.9e-15 85.5 63 61.9
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 64 62.5
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.5e-15 85.1 62 62.9
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.5e-15 85.1 77 59.7
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.5e-15 85.1 76 60.5
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.5e-15 85.1 68 58.8
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.6e-15 84.0 81 58.0
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 5.6e-15 84.0 78 53.8
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.3e-15 83.6 73 61.6
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.3e-15 83.6 73 61.6
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 9.5e-15 83.2 83 59.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 9.5e-15 83.2 83 59.0
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 83 57.8
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 83 57.8
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 73 61.6
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.2e-14 82.8 81 55.6
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.1e-14 82.0 46 76.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 72 56.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.1e-14 82.0 72 56.9
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 2.8e-14 81.6 65 60.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.6e-14 81.3 80 51.2
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.6e-14 81.3 74 58.1
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 6.2e-14 80.5 78 61.5
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 6.2e-14 80.5 46 73.9
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.1e-13 79.7 65 56.9
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.4e-13 79.3 74 50.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.4e-13 79.3 72 55.6
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.4e-13 78.6 70 50.0
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.4e-13 78.6 71 59.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 8.9e-13 76.6 45 73.3
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-12 75.9 52 59.6
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.5e-12 75.9 81 54.3
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.6e-12 75.1 64 54.7
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.4e-12 74.3 62 56.5
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 8.4e-11 70.1 53 64.2
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 8.4e-11 70.1 45 64.4
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 8.4e-11 70.1 60 61.7
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.4e-10 69.3 53 56.6
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.9e-10 68.9 51 62.7
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 9.2e-10 66.6 51 60.8
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 9.2e-10 66.6 58 53.4
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 9.2e-10 66.6 66 54.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 1.0e-08 63.2 68 57.4
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.3e-08 62.0 48 58.3
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.9e-07 58.9 35 71.4
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.2e-06 53.9 43 53.5


User provided reference genes

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