Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.6e-61 239.2 118 100.0
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 2.0e-56 222.2 117 93.2
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.5e-56 221.5 115 93.0
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 2.1e-53 212.2 119 86.6
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 5.2e-52 207.6 118 83.9
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 6.8e-52 207.2 119 84.0
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.5e-51 206.1 118 86.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 3.4e-51 204.9 119 83.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.4e-51 204.5 119 83.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 4.4e-51 204.5 116 84.5
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 83.2
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 83.2
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 83.2
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 7.5e-51 203.8 119 82.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 7.5e-51 203.8 119 82.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 7.5e-51 203.8 119 82.4
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 7.5e-51 203.8 115 82.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 9.8e-51 203.4 119 82.4
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 9.8e-51 203.4 119 82.4
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.3e-50 203.0 119 82.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 85.2
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 81.7
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 82.2
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 81.5
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.9e-50 201.8 119 81.5
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.9e-50 201.8 118 83.1
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 6.4e-50 200.7 119 81.5
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 6.4e-50 200.7 115 82.6
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 8.3e-50 200.3 118 80.5
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.1e-49 199.9 115 79.1
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.4e-49 199.5 118 80.5
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.9e-49 199.1 115 82.6
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 81.4
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 81.4
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.4e-49 198.7 118 80.5
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.4e-49 198.7 118 80.5
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.2e-49 198.4 115 82.6
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 3.2e-49 198.4 118 80.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 3.2e-49 198.4 118 81.4
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 4.1e-49 198.0 118 80.5
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 5.4e-49 197.6 118 80.5
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.2e-48 196.4 118 79.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.2e-48 196.4 112 82.1
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.2e-48 196.4 118 78.8
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.7e-48 195.3 118 78.8
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.5e-48 194.9 115 80.9
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 3.5e-48 194.9 115 78.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.8e-48 193.7 118 78.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 7.8e-48 193.7 114 79.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.0e-47 193.4 115 80.0
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.7e-47 192.6 112 80.4
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.3e-47 192.2 112 80.4
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 74.6
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.0e-47 191.8 120 78.3
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 3.0e-47 191.8 118 78.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 3.9e-47 191.4 118 75.4
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 3.9e-47 191.4 115 79.1
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.6e-47 190.7 114 78.9
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 8.6e-47 190.3 118 76.3
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-46 189.9 112 80.4
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.1e-46 189.9 115 78.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.5e-46 189.5 114 78.1
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.5e-46 189.5 125 76.0
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.9e-46 189.1 115 75.7
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 115 78.3
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 115 78.3
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.9e-46 189.1 115 78.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-46 188.7 115 77.4
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.5e-46 188.7 112 79.5
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.3e-46 188.3 112 78.6
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 4.3e-46 188.0 115 77.4
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 7.3e-46 187.2 112 77.7
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 7.3e-46 187.2 115 76.5
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 9.5e-46 186.8 112 79.5
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-45 186.4 118 72.0
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.6e-45 186.0 115 76.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 2.1e-45 185.7 113 78.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 75.7
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 76.5
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 76.5
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 76.5
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.8e-45 185.3 135 71.1
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.8e-45 185.3 118 73.7
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 6.2e-45 184.1 115 76.5
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 6.2e-45 184.1 114 78.9
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.1e-44 183.3 112 75.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.4e-44 183.0 115 77.4
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.4e-44 183.0 113 78.8
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.3e-44 182.2 114 77.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.0e-44 181.4 117 75.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.0e-44 181.4 117 75.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 4.0e-44 181.4 115 75.7
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 5.2e-44 181.0 119 73.9
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.8e-44 180.6 113 77.0
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 73.9
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 73.9
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 73.9
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 73.9
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 8.9e-44 180.3 119 73.9
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.2e-43 179.9 114 76.3
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.5e-43 179.5 113 73.5
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.6e-43 178.7 114 75.4
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 2.6e-43 178.7 119 73.1
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 3.4e-43 178.3 118 72.9
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 4.4e-43 177.9 127 66.9
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 4.4e-43 177.9 119 73.1
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 7.5e-43 177.2 120 70.8
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 8.3e-42 173.7 117 73.5
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 2.4e-41 172.2 118 67.8
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 3.2e-41 171.8 114 73.7
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-40 169.9 97 81.4
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.1e-40 169.1 116 69.8
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 3.5e-40 168.3 118 72.0
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 7.8e-40 167.2 115 66.1
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.3e-39 166.4 97 80.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.7e-39 166.0 118 65.3
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 1.7e-39 166.0 118 65.3
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.0e-39 165.2 100 78.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.0e-39 165.2 100 78.0
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 8.6e-39 163.7 165 53.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.5e-38 162.2 115 70.4
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 7.3e-38 160.6 115 70.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.6e-37 159.5 97 78.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 8.9e-36 153.7 99 73.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-35 153.3 101 72.3
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 2.6e-35 152.1 96 75.0
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 9.9e-35 150.2 117 65.8
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.8e-34 148.3 119 63.9
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 6.4e-34 147.5 99 66.7
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 4.6e-32 141.4 109 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.1e-31 137.9 112 58.0
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.6e-31 137.5 117 57.3
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.5e-30 136.3 101 63.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 5.6e-30 134.4 103 64.1
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 7.3e-30 134.0 110 63.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 3.1e-28 128.6 115 53.9
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 5.6e-22 107.8 64 79.7
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 5.6e-22 107.8 122 47.5
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.8e-21 105.5 64 81.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 4.8e-21 104.8 55 92.7
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.8e-20 102.8 77 71.4
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.1e-20 102.1 64 76.6
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 6.9e-20 100.9 77 62.3
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-19 100.1 53 86.8
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.5e-19 99.8 59 79.7
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 2.0e-19 99.4 54 83.3
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 7.6e-19 97.4 160 39.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.3e-18 96.7 53 81.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.3e-18 96.7 61 73.8
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.7e-18 96.3 64 73.4
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 2.2e-18 95.9 59 79.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 6.4e-18 94.4 68 72.1
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-17 93.2 70 64.3
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.2e-16 90.1 52 76.9
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.0e-16 87.8 106 45.3
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.0e-15 87.0 129 41.1
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.0e-15 87.0 137 38.7
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 8.4e-10 67.4 51 66.7
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 2.1e-08 62.8 72 48.6
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 4.6e-08 61.6 35 85.7
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 7.9e-08 60.8 103 43.7


User provided reference genes

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