Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1413.7 742 100.0
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1397.5 742 98.8
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1377.8 743 97.6
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1357.4 743 96.0
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1328.2 743 93.9
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1319.3 743 93.5
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1316.2 742 93.0
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1313.1 742 92.9
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1300.4 743 92.9
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1299.6 742 92.2
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1299.6 743 92.9
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1299.3 742 92.2
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1298.5 742 92.0
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1298.1 742 92.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1293.1 745 92.5
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1293.1 743 92.1
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1289.6 748 90.6
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1246.5 743 89.9
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1174.1 749 83.8
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 0.0e+00 1089.3 748 77.9
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 3.7e-305 1051.2 749 75.0
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 1.2e-300 1036.2 749 75.0
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 4.7e-300 1034.2 734 75.3
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 1.1e-296 1023.1 747 73.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.4e-296 1022.7 748 73.0
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.0e-294 1016.5 748 73.5
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 5.6e-293 1010.7 748 72.3
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.6e-292 1008.1 746 71.8
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 4.0e-291 1004.6 748 71.7
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 8.9e-291 1003.4 748 71.7
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.5e-290 1002.7 748 72.3
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 5.8e-290 1000.7 748 71.0
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 7.5e-290 1000.3 746 73.2
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 3.7e-289 998.0 747 72.2
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 4.1e-288 994.6 753 71.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.1e-288 994.6 765 71.2
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 7.0e-288 993.8 765 71.1
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 9.2e-288 993.4 747 71.9
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.2e-287 993.0 748 72.1
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 3.5e-287 991.5 746 73.2
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.6e-287 991.1 747 71.5
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 1.3e-286 989.6 747 71.2
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 5.0e-286 987.6 747 71.4
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.5e-285 986.1 748 70.9
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 5.6e-285 984.2 748 70.7
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.6e-284 982.6 749 70.9
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.8e-284 981.9 765 70.3
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 6.2e-284 980.7 747 71.5
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 3.1e-283 978.4 759 70.8
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 2.0e-282 975.7 752 70.9
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 2.6e-282 975.3 718 73.3
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 3.4e-282 974.9 749 71.2
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 4.4e-282 974.5 738 70.9
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 7.5e-282 973.8 749 71.2
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 2.9e-281 971.8 747 70.8
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.4e-280 969.5 750 69.9
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-280 969.1 747 69.7
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.9e-280 969.1 747 70.3
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 4.1e-280 968.0 747 70.4
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.6e-279 966.1 747 69.7
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 4.6e-279 964.5 753 70.9
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.1e-277 959.9 747 68.8
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 7.3e-277 957.2 748 70.5
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 2.1e-276 955.7 748 70.3
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.8e-276 955.3 746 69.0
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 3.6e-276 954.9 750 70.5
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 8.1e-276 953.7 753 70.5
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 1.4e-275 953.0 747 70.0
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.8e-275 952.6 747 69.5
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 7.6e-274 947.2 749 70.2
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.7e-273 946.0 749 69.4
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.8e-273 944.9 749 67.6
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 6.0e-271 937.6 747 69.6
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 3.0e-270 935.3 745 69.0
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 3.9e-270 934.9 749 69.4
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.5e-269 932.9 767 68.4
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.9e-269 932.6 746 67.7
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 5.6e-269 931.0 740 69.6
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.4e-267 925.6 747 67.7
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.4e-267 925.6 745 68.1
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 3.1e-267 925.2 748 67.2
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 4.0e-267 924.9 745 67.8
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 4.0e-267 924.9 749 69.3
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 9.9e-266 920.2 767 67.5
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 9.9e-266 920.2 747 68.1
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 2.9e-265 918.7 738 68.6
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 8.4e-265 917.1 749 68.6
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.4e-264 915.6 747 67.7
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 7.1e-264 914.1 751 66.8
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.6e-263 912.9 747 66.8
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 2.1e-263 912.5 758 66.4
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 3.5e-263 911.8 749 68.8
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 7.8e-263 910.6 794 65.6
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.7e-262 909.4 745 67.4
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 4.3e-261 904.8 731 67.0
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 7.3e-261 904.0 748 68.0
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 9.6e-261 903.7 698 69.3
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 8.1e-260 900.6 790 63.8
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.8e-259 899.4 731 68.5
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 4.0e-259 898.3 735 66.9
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 5.3e-259 897.9 747 66.1
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.3e-257 893.3 747 66.4
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.3e-257 893.3 747 65.5
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 2.9e-257 892.1 734 66.1
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 4.9e-257 891.3 730 67.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 1.1e-256 890.2 731 66.3
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.9e-256 889.4 750 65.5
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 2.3e-254 882.5 752 65.3
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 8.7e-254 880.6 755 64.9
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.3e-253 878.2 753 62.7
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 9.6e-253 877.1 747 65.9
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.6e-252 876.3 733 68.1
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.1e-252 875.9 731 66.2
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 6.2e-252 874.4 731 66.8
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 6.2e-252 874.4 731 66.8
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.1e-251 873.6 742 65.6
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 4.0e-251 871.7 723 65.7
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 5.3e-251 871.3 736 65.1
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 9.0e-251 870.5 764 64.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 7.6e-250 867.5 752 64.1
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 3.9e-246 855.1 744 63.8
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 4.8e-244 848.2 788 61.2
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.5e-242 843.2 716 66.1
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.4e-242 842.0 731 63.6
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 3.8e-241 838.6 731 63.6
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 6.9e-235 817.8 755 62.3
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 1.0e-233 813.9 805 61.5
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 4.2e-232 808.5 783 60.4
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.2e-228 794.3 554 75.3
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 5.3e-227 791.6 757 61.4
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 5.5e-224 781.6 756 60.1
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 9.1e-211 737.6 747 57.7
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.0e-210 736.5 757 56.1
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 2.1e-207 726.5 732 58.9
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.7e-207 726.1 724 58.1
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 5.4e-195 685.3 440 79.5
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 8.3e-188 661.4 769 52.7
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 8.6e-185 651.4 729 52.8
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 1.2e-170 604.4 629 55.6
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.7e-164 583.9 581 59.2
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 5.4e-163 578.9 372 80.1
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.1e-139 501.5 733 44.5
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 8.4e-132 475.3 439 61.0
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.3e-131 471.9 625 47.4
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 5.1e-129 466.1 303 78.9
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.5e-123 446.0 762 42.0
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.5e-123 446.0 762 42.0
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.8e-118 431.0 775 40.1
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 9.4e-115 418.7 449 56.3
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.6e-114 417.9 513 47.4
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 1.2e-101 375.2 360 58.1
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 1.8e-89 334.7 484 43.0
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.8e-89 334.7 258 69.8
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.0e-89 333.6 357 58.0
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 4.8e-87 326.6 282 62.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 8.0e-82 309.3 184 85.9
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 7.7e-77 292.7 355 50.4
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 8.0e-66 256.1 448 39.5
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.0e-65 255.8 628 36.5
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 4.9e-55 220.3 461 36.0
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.6e-51 206.8 646 33.7
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 2.3e-49 201.4 639 29.0
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 7.3e-43 179.9 192 56.2
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 1.9e-38 165.2 110 73.6
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.0e-36 157.9 131 64.9
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 2.0e-32 145.2 72 97.2
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 2.0e-32 145.2 72 97.2
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 2.6e-32 144.8 167 52.7
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 3.2e-30 137.9 72 95.8
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 9.3e-30 136.3 95 67.4
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.6e-29 135.6 95 67.4
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 1.6e-29 135.6 76 90.8
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-25 122.9 299 34.8
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.2e-21 109.4 226 36.7
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 5.6e-19 100.5 247 36.8
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 9.6e-19 99.8 51 92.2
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 6.2e-18 97.1 60 71.7
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.0e-17 94.4 50 90.0
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.7e-15 89.0 220 33.2
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 6.5e-15 87.0 60 65.0
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 9.3e-14 83.2 69 62.3
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 9.3e-14 83.2 84 57.1
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.6e-13 82.4 85 54.1
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 8.2e-10 70.1 88 48.9
VMungo0133G0001 Vigna mungo HOM05D003681 ORTHO05D433683 2.5e-06 58.5 87 46.0


User provided reference genes

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