Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.0e-86 322.8 211 100.0
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.0e-74 282.3 215 89.8
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.9e-74 282.0 215 79.1
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 7.3e-73 277.7 213 76.5
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.2e-72 274.6 214 80.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 2.4e-71 272.7 227 69.6
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 5.3e-71 271.6 226 69.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-70 270.4 230 76.1
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.5e-70 270.0 217 81.1
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.2e-56 221.5 129 80.6
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-45 187.2 216 54.2
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-44 183.0 207 49.8
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.1e-41 174.1 209 48.3
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 9.7e-41 171.0 219 53.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.7e-40 169.1 213 61.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.8e-37 159.1 220 49.5
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-34 151.0 210 43.8
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-34 151.0 210 43.8
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 2.0e-33 146.7 214 49.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 5.7e-33 145.2 129 56.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 8.2e-32 141.4 128 53.1
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.1e-31 141.0 216 40.3
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.4e-31 140.6 128 53.9
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.8e-31 140.2 209 41.6
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.8e-31 140.2 129 55.0
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 2.4e-31 139.8 132 54.5
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 3.1e-31 139.4 211 40.3
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.1e-31 139.0 132 53.0
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 9.1e-31 137.9 211 44.5
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 9.1e-31 137.9 128 53.1
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 1.2e-30 137.5 130 50.8
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.6e-30 136.3 224 43.3
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.4e-30 136.0 214 45.8
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 4.5e-30 135.6 214 37.9
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.0e-29 134.4 206 40.3
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.7e-29 133.7 131 50.4
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.2e-29 133.3 218 39.4
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 2.2e-29 133.3 228 44.3
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.8e-29 132.5 128 53.1
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.0e-29 132.1 206 38.3
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 8.5e-29 131.3 210 36.7
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.1e-28 131.0 206 39.3
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.9e-28 130.2 128 52.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.5e-28 129.8 131 49.6
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.2e-28 129.4 212 38.7
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 4.2e-28 129.0 131 49.6
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.7e-27 126.3 130 50.8
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.6e-27 125.9 131 50.4
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 6.1e-27 125.2 129 47.3
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.0e-26 124.4 215 41.9
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.4e-26 124.0 136 49.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-26 123.2 210 39.0
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 3.9e-26 122.5 122 50.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 3.9e-26 122.5 131 48.1
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 6.7e-26 121.7 122 49.2
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.1e-25 120.9 134 48.5
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 1.5e-25 120.6 136 48.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.6e-25 119.8 129 46.5
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.4e-25 119.0 210 36.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.2e-24 116.7 135 47.4
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 6.3e-24 115.2 208 37.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 6.3e-24 115.2 218 35.3
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 8.2e-24 114.8 129 46.5
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.4e-23 113.2 131 54.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.4e-23 113.2 125 47.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.4e-23 113.2 215 34.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 4.1e-23 112.5 129 47.3
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 5.3e-23 112.1 223 36.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 9.1e-23 111.3 129 47.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.5e-22 110.5 128 44.5
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.0e-22 110.2 129 41.1
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 2.6e-22 109.8 85 61.2
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.2e-21 106.7 129 44.2
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.9e-21 106.3 217 37.3
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 3.8e-21 105.9 227 33.5
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 3.8e-21 105.9 212 36.8
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.0e-21 105.5 107 49.5
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.5e-21 104.8 89 56.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.5e-21 104.8 130 46.9
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 8.5e-21 104.8 210 34.8
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 8.5e-21 104.8 88 55.7
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 8.5e-21 104.8 101 47.5
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-20 104.0 117 47.9
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 1.5e-20 104.0 126 46.8
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.5e-20 104.0 127 45.7
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.9e-20 103.6 118 46.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 7.2e-20 101.7 90 53.3
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 7.2e-20 101.7 123 42.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 9.4e-20 101.3 99 48.5
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.4e-20 101.3 130 46.2
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.2e-19 100.9 128 42.2
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.2e-19 100.9 86 55.8
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.6e-19 100.5 120 45.8
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.6e-19 100.5 131 46.6
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 2.1e-19 100.1 201 33.8
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-19 100.1 131 46.6
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.0e-18 97.8 123 45.5
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.0e-18 97.8 213 33.8
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-18 97.4 127 41.7
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.4e-18 97.4 127 41.7
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.8e-18 97.1 127 44.9
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 4.0e-18 95.9 86 52.3
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.8e-18 94.7 130 45.4
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-17 94.4 130 44.6
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.5e-17 94.0 126 38.9
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.5e-17 94.0 126 38.9
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.0e-17 93.6 127 44.1
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.6e-17 93.2 128 46.1
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.6e-17 93.2 129 43.4
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 2.6e-17 93.2 129 41.9
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.6e-17 93.2 127 43.3
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.3e-17 92.8 132 43.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.4e-17 92.4 130 43.8
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.3e-16 90.9 132 43.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.7e-16 90.5 122 41.0
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.7e-16 90.5 215 35.8
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 2.2e-16 90.1 107 43.9
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-16 89.7 84 51.2
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.8e-16 89.7 129 41.1
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.7e-16 89.4 218 35.8
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 4.8e-16 89.0 129 40.3
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.4e-15 87.4 120 41.7
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 4.1e-15 85.9 84 50.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 4.1e-15 85.9 84 50.0
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 5.3e-15 85.5 84 48.8
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 5.3e-15 85.5 84 48.8
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 5.3e-15 85.5 84 48.8
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 9.1e-15 84.7 92 44.6
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.2e-14 84.3 129 39.5
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.6e-14 83.2 117 40.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.3e-13 80.9 87 48.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-13 79.7 128 39.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 8.5e-13 78.2 128 39.1
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-12 77.8 131 41.2
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-12 77.8 128 38.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-12 76.3 131 35.9
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 3.2e-12 76.3 131 35.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 7.2e-12 75.1 88 44.3
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.6e-11 73.9 89 42.7
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.6e-11 73.9 89 42.7
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.1e-11 73.6 128 36.7
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.1e-11 73.6 128 36.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 4.7e-11 72.4 89 40.4
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 4.7e-11 72.4 89 40.4
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.1e-11 72.0 89 42.7
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-10 71.2 89 41.6
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 2.3e-10 70.1 126 39.7
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 5.2e-10 68.9 89 40.4
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 8.8e-10 68.2 108 34.3
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.5e-09 67.4 89 39.3
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 2.6e-09 66.6 89 40.4
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 2.6e-09 66.6 89 40.4
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 7.5e-09 65.1 221 30.8
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 7.5e-09 65.1 84 42.9
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 2.2e-08 63.5 127 36.2
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.2e-08 63.5 184 39.7
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 2.8e-08 63.2 101 36.6
BcaB06g27546 Brassica carinata HOM05D002760 ORTHO05D003169 2.4e-07 60.1 28 92.9
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 4.1e-07 59.3 211 30.8
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 5.4e-07 58.9 126 31.7
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 7.0e-07 58.5 130 32.3
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 2.0e-06 57.0 216 31.5
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 2.0e-06 57.0 216 31.5
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.7e-06 56.6 113 34.5
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.7e-06 56.6 212 30.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.7e-06 56.6 78 38.5
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 7.7e-06 55.1 86 38.4


User provided reference genes

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