Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G39240 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 9.1e-54 213.4 113 100.0
AL7G51220 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 2.8e-34 148.7 107 81.3
CARHR263170 Cardamine hirsuta HOM05D007413 ORTHO05D009357 4.5e-29 131.3 120 66.7
Thhalv10027993m.g Eutrema salsugineum HOM05D007413 ORTHO05D009357 2.3e-28 129.0 118 66.1
Sp7g02750 Schrenkiella parvula HOM05D007413 ORTHO05D009357 1.6e-26 122.9 118 66.1
BcaB06g27281 Brassica carinata HOM05D007413 ORTHO05D009357 1.8e-25 119.4 120 64.2
Carub.0007s3668 Capsella rubella HOM05D007413 ORTHO05D009357 2.3e-25 119.0 117 69.2
BcaC02g09685 Brassica carinata HOM05D007413 ORTHO05D009357 4.4e-24 114.8 120 61.7
A04p11950 Brassica napus HOM05D007413 ORTHO05D009357 4.4e-24 114.8 120 61.7
C04p45600 Brassica napus HOM05D007413 ORTHO05D009357 4.4e-24 114.8 120 61.7
BolC4t26142H Brassica oleracea HOM05D007413 ORTHO05D009357 4.4e-24 114.8 120 61.7
BraA04t16860Z Brassica rapa HOM05D007413 ORTHO05D009357 4.4e-24 114.8 120 61.7
Aa31LG2G3920 Aethionema arabicum HOM05D007413 ORTHO05D009357 1.7e-15 86.3 118 53.4
Aa31LG9G16690 Aethionema arabicum HOM05D007413 ORTHO05D009357 2.2e-15 85.9 107 55.1
AT3G29370 Arabidopsis thaliana HOM05D007413 ORTHO05D009357 4.9e-15 84.7 112 51.8
AL5G19460 Arabidopsis lyrata HOM05D007413 ORTHO05D009357 1.2e-13 80.1 121 47.1
Carub.0005s0809 Capsella rubella HOM05D007413 ORTHO05D009357 6.6e-12 74.3 111 52.3
THA.LOC109116393 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 3.3e-11 72.0 113 47.8
THA.LOC104825781 Tarenaya hassleriana HOM05D007413 ORTHO05D009357 2.1e-10 69.3 109 45.9
Eucgr.I02025 Eucalyptus grandis HOM05D007413 ORTHO05D009357 5.2e-09 64.7 97 46.4
FAN02G2783 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.5e-08 63.2 114 41.2
PGR004G0469 Punica granatum HOM05D007413 ORTHO05D009357 1.5e-08 63.2 119 38.7
Oeu062157.1 Olea europaea HOM05D007413 ORTHO05D009357 2.0e-08 62.8 105 46.7
Oeu007062.1 Olea europaea HOM05D007413 ORTHO05D009357 2.6e-08 62.4 81 44.4
CANSAT64G0406 Cannabis sativa HOM05D007413 ORTHO05D009357 4.4e-08 61.6 115 42.6
FvH4_6g47010 Fragaria vesca HOM05D007413 ORTHO05D009357 4.4e-08 61.6 112 42.0
FAN09G1793 Fragaria x ananassa HOM05D007413 ORTHO05D009357 4.4e-08 61.6 112 42.0
FAN14G4532 Fragaria x ananassa HOM05D007413 ORTHO05D009357 4.4e-08 61.6 112 42.0
COL.COLO4_00052 Corchorus olitorius HOM05D007413 ORTHO05D009357 7.5e-08 60.8 67 55.2
Phvul.004G035200 Phaseolus vulgaris HOM05D007413 ORTHO05D009357 7.5e-08 60.8 76 46.1
Lsat_1_v5_gn_4_171221 Lactuca sativa HOM05D007413 ORTHO05D009357 9.9e-08 60.5 107 39.3
QL02p067998 Quercus lobata HOM05D007413 ORTHO05D009357 9.9e-08 60.5 100 43.0
Ciclev10013609m.g Citrus clementina HOM05D007413 ORTHO05D009357 1.3e-07 60.1 78 44.9
FAN05G2048 Fragaria x ananassa HOM05D007413 ORTHO05D009357 1.7e-07 59.7 114 41.2
Sabra04G0069100 Salix brachista HOM05D007413 ORTHO05D009357 1.7e-07 59.7 78 46.2
VMungo0464G1276 Vigna mungo HOM05D007413 ORTHO05D009357 1.7e-07 59.7 75 48.0
MD17G1057900 Malus domestica HOM05D007413 ORTHO05D009357 2.2e-07 59.3 97 43.3
RcHm_v2.0_Chr2g0166071 Rosa chinensis HOM05D007413 ORTHO05D009357 2.2e-07 59.3 97 41.2
SGA_v2.0_scaffold148G36473 Striga asiatica HOM05D007413 ORTHO05D009357 2.2e-07 59.3 94 44.7
Cpa.g.sc3362.1 Carica papaya HOM05D007413 ORTHO05D009357 3.7e-07 58.5 79 48.1
Lsat_1_v5_gn_2_87601 Lactuca sativa HOM05D007413 ORTHO05D009357 4.9e-07 58.2 105 41.0
Potri.017G093000 Populus trichocarpa HOM05D007413 ORTHO05D009357 4.9e-07 58.2 80 42.5
TPR.G10008 Trifolium pratense HOM05D007413 ORTHO05D009357 6.4e-07 57.8 102 36.3
Lj2g0007962 Lotus japonicus HOM05D007413 ORTHO05D009357 1.1e-06 57.0 75 46.7
Nitab4.5_0000565g0230 Nicotiana tabacum HOM05D007413 ORTHO05D009357 1.1e-06 57.0 74 48.6
Lalb_Chr06g0174991 Lupinus albus HOM05D007413 ORTHO05D009357 1.4e-06 56.6 74 44.6
Prupe.3G256400 Prunus persica HOM05D007413 ORTHO05D009357 1.4e-06 56.6 73 46.6
CSS0009905 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.9e-06 56.2 67 50.7
CSS0018085 Camellia sinensis var. sinensis HOM05D007413 ORTHO05D009357 1.9e-06 56.2 67 50.7
ClCG07G007410 Citrullus lanatus HOM05D007413 ORTHO05D009357 1.9e-06 56.2 94 42.6
MELO3C024851.2 Cucumis melo HOM05D007413 ORTHO05D009357 1.9e-06 56.2 98 39.8
ClCG11G004700 Citrullus lanatus HOM05D007413 ORTHO05D009357 3.2e-06 55.5 115 40.0
Cc07_g04120 Coffea canephora HOM05D007413 ORTHO05D009357 3.2e-06 55.5 99 41.4
Glyma.13G057000 Glycine max HOM05D007413 ORTHO05D009357 4.1e-06 55.1 80 41.2
Gorai.012G049200 Gossypium raimondii HOM05D007413 ORTHO05D009357 4.1e-06 55.1 76 43.4
Manes.01G097200 Manihot esculenta HOM05D007413 ORTHO05D009357 4.1e-06 55.1 99 42.4
Nitab4.5_0010051g0020 Nicotiana tabacum HOM05D007413 ORTHO05D009357 5.4e-06 54.7 105 38.1
Solyc02g088740.1 Solanum lycopersicum HOM05D007413 ORTHO05D009357 5.4e-06 54.7 100 40.0
Gohir.A05G371900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 7.1e-06 54.3 76 43.4
Gohir.D04G043900 Gossypium hirsutum HOM05D007413 ORTHO05D009357 7.1e-06 54.3 76 43.4
Migut.H00635 Erythranthe guttata HOM05D007413 ORTHO05D009357 9.2e-06 53.9 94 40.4
SalBow1G6503 Salvia bowleyana HOM05D007413 ORTHO05D009357 9.2e-06 53.9 84 42.9
Sopen02g033450 Solanum pennellii HOM05D007413 ORTHO05D009357 9.2e-06 53.9 98 38.8
Thecc.04G093400 Theobroma cacao HOM05D007413 ORTHO05D009357 9.2e-06 53.9 118 35.6


User provided reference genes

Program Settings