Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 4.9e-51 204.5 132 100.0
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 2.8e-46 188.7 132 84.8
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 3.6e-33 145.2 131 66.4
CARHR264020 Cardamine hirsuta HOM05D009227 ORTHO05D009956 1.9e-31 139.4 98 76.5
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 2.6e-23 112.5 102 59.8
SpUn1356_0010 Schrenkiella parvula HOM05D009227 ORTHO05D009956 2.6e-23 112.5 138 64.5
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 9.1e-21 104.0 99 58.6
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 9.1e-21 104.0 99 58.6
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 9.1e-21 104.0 99 58.6
A06p39660 Brassica napus HOM05D009227 ORTHO05D009956 1.5e-20 103.2 99 58.6
BraA06t26881Z Brassica rapa HOM05D009227 ORTHO05D009956 1.5e-20 103.2 99 58.6
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 1.5e-20 103.2 100 59.0
Sp2g18210 Schrenkiella parvula HOM05D009227 ORTHO05D009956 5.9e-20 101.3 99 56.6
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 7.7e-20 100.9 80 61.2
BcaC06g30842 Brassica carinata HOM05D009227 ORTHO05D009956 1.0e-19 100.5 99 57.6
Thhalv10027989m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 1.9e-18 96.3 138 56.5
Thhalv10005597m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 2.5e-18 95.9 97 55.7
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 4.2e-18 95.1 92 57.6
A02p37090 Brassica napus HOM05D009227 ORTHO05D009956 2.7e-17 92.4 92 57.6
BraA02t08695Z Brassica rapa HOM05D009227 ORTHO05D009956 2.7e-17 92.4 92 57.6
C02p56090 Brassica napus HOM05D009227 ORTHO05D009956 3.6e-17 92.0 92 56.5
BolC2t11666H Brassica oleracea HOM05D009227 ORTHO05D009956 3.6e-17 92.0 92 56.5
AT3G30580 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 2.6e-15 85.9 94 55.3
BraA04t16832Z Brassica rapa HOM05D009227 ORTHO05D009956 1.4e-13 80.1 138 42.8
A04p11640 Brassica napus HOM05D009227 ORTHO05D009956 1.6e-12 76.6 138 41.3
BcaC02g09668 Brassica carinata HOM05D009227 ORTHO05D009956 2.0e-12 76.3 103 49.5
C04p45370 Brassica napus HOM05D009227 ORTHO05D009956 2.0e-12 76.3 103 49.5
BolC4t26119H Brassica oleracea HOM05D009227 ORTHO05D009956 2.0e-12 76.3 103 49.5
BcaB06g27244 Brassica carinata HOM05D009227 ORTHO05D009956 1.3e-11 73.6 138 40.6
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 5.5e-10 68.2 76 48.7
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.0e-08 63.9 75 45.3
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 2.3e-08 62.8 87 48.3
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 2.3e-08 62.8 99 41.4
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 3.0e-08 62.4 108 38.0
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 4.0e-08 62.0 76 47.4
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 6.7e-08 61.2 108 37.0
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 6.7e-08 61.2 108 37.0
MD17G1069000 Malus domestica HOM05D008889 ORTHO05D009956 6.7e-08 61.2 95 44.2
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 6.7e-08 61.2 98 40.8
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.5e-07 60.1 108 36.1
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 1.5e-07 60.1 71 46.5
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 2.6e-07 59.3 73 49.3
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 3.3e-07 58.9 103 40.8
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 3.3e-07 58.9 103 40.8
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 4.4e-07 58.5 87 46.0
Oeu048107.1 Olea europaea HOM05D026131 ORTHO05D009956 7.5e-07 57.8 73 47.9
Prupe.3G245600 Prunus persica HOM05D008889 ORTHO05D009956 7.5e-07 57.8 98 43.9
Sed0005169 Sechium edule HOM05D008563 ORTHO05D009802 1.7e-06 56.6 89 46.1
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 2.2e-06 56.2 73 49.3
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 2.8e-06 55.8 90 41.1
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 2.8e-06 55.8 82 47.6
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 3.7e-06 55.5 83 43.4
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 4.8e-06 55.1 96 40.6
Ca_23534_v3 Cicer arietinum L. HOM05D008889 ORTHO05D009956 8.2e-06 54.3 97 40.2
Gohir.D08G061900 Gossypium hirsutum HOM05D009227 ORTHO05D009956 8.2e-06 54.3 79 49.4
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 8.2e-06 54.3 96 40.6


User provided reference genes

Program Settings