Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 4.2e-101 371.3 183 100.0
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.8e-86 321.6 173 91.9
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.6e-84 316.2 185 85.9
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.6e-84 316.2 185 87.6
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-82 310.1 184 85.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.4e-80 303.1 183 84.7
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 5.0e-78 294.7 184 81.5
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 5.0e-78 294.7 184 81.5
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 4.3e-77 291.6 185 82.2
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 4.3e-77 291.6 185 82.2
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.1e-76 289.3 185 81.6
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.1e-76 289.3 186 81.2
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 4.7e-76 288.1 186 80.6
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 6.1e-76 287.7 186 80.6
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-75 286.6 186 80.6
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.7e-73 279.6 188 79.8
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.3e-70 270.0 183 78.7
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-67 259.6 187 74.9
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.7e-63 245.7 175 73.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 4.1e-56 221.9 176 67.0
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 9.2e-56 220.7 186 66.7
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-55 220.3 176 66.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.6e-55 218.4 182 67.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-54 217.2 176 65.9
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-54 217.2 176 65.9
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.0e-54 217.2 176 65.9
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.3e-54 216.9 177 66.1
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.9e-54 215.3 182 66.5
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-52 210.3 175 66.9
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 4.1e-48 195.3 196 61.7
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 4.6e-47 191.8 177 59.9
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 7.8e-39 164.5 194 51.5
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.0e-38 164.1 192 50.5
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-38 163.7 192 50.5
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.3e-38 162.9 147 67.3
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 5.6e-37 158.3 193 51.8
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.6e-36 156.8 189 51.9
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.8e-36 156.0 168 54.8
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 4.8e-36 155.2 126 69.0
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 5.3e-35 151.8 176 52.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.9e-35 151.4 185 50.8
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.9e-35 151.4 184 51.1
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.9e-35 151.4 180 48.3
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 3.4e-34 149.1 175 52.0
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 3.4e-34 149.1 185 50.3
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.5e-34 148.7 171 50.3
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 4.5e-34 148.7 175 53.1
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.3e-33 147.1 173 51.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.4e-33 144.4 176 47.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.1e-32 144.1 189 50.8
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.9e-32 143.3 175 48.0
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 1.9e-32 143.3 179 47.5
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.9e-32 143.3 183 47.0
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 4.2e-32 142.1 180 48.9
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 7.1e-32 141.4 186 46.2
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 9.3e-32 141.0 175 49.1
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-31 140.2 199 42.7
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.6e-31 140.2 178 43.8
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-31 139.0 179 48.0
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.5e-31 139.0 180 46.7
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.6e-31 138.7 187 44.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 6.0e-31 138.3 185 45.9
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 6.0e-31 138.3 182 48.4
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 7.9e-31 137.9 173 49.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-30 137.5 188 47.3
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.0e-30 137.5 180 47.2
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.3e-30 137.1 186 44.6
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-30 137.1 194 41.8
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.3e-30 137.1 182 47.3
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.8e-30 136.7 189 45.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 2.3e-30 136.3 180 46.7
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.3e-30 136.3 190 43.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 3.0e-30 136.0 178 46.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 6.7e-30 134.8 189 46.0
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 6.7e-30 134.8 182 48.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.5e-29 133.7 175 49.1
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.5e-29 133.7 193 44.0
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.9e-29 133.3 186 45.7
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.5e-29 132.9 182 48.4
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.5e-29 132.9 182 47.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 3.3e-29 132.5 171 47.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.3e-29 132.1 186 42.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.3e-29 132.1 190 43.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 4.3e-29 132.1 183 45.4
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 5.6e-29 131.7 176 47.7
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.6e-29 131.7 171 45.0
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 7.4e-29 131.3 196 43.4
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-28 129.8 182 46.7
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.7e-28 129.0 171 44.4
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 6.2e-28 128.3 174 43.7
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.1e-28 127.9 174 46.6
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.1e-27 127.5 196 44.9
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-27 127.1 174 45.4
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.4e-27 127.1 174 47.1
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.8e-27 126.7 184 47.3
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.8e-27 126.7 175 45.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.4e-27 126.3 188 38.8
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.1e-27 125.9 177 41.8
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.0e-27 125.6 201 41.3
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 5.3e-27 125.2 160 47.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 6.9e-27 124.8 180 44.4
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 6.9e-27 124.8 177 46.3
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.2e-26 124.0 171 42.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.5e-26 123.6 181 42.5
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-26 123.2 164 48.2
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.0e-26 123.2 182 45.6
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 4.5e-26 122.1 181 40.3
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 5.8e-26 121.7 186 41.9
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.6e-26 121.3 195 40.5
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 7.6e-26 121.3 183 41.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.3e-25 120.6 196 41.3
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.7e-25 120.2 177 41.2
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-25 120.2 185 45.4
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.2e-25 119.8 184 45.1
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.9e-25 119.4 184 44.0
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.9e-25 119.4 177 44.1
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 3.8e-25 119.0 180 48.3
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.9e-25 118.6 194 42.8
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 6.4e-25 118.2 172 45.3
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 8.4e-25 117.9 179 45.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-24 117.5 174 43.1
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-24 117.5 166 45.2
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.4e-24 116.3 179 43.6
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.4e-24 116.3 176 45.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-24 115.9 185 44.3
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.5e-24 115.2 172 45.3
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.2e-23 114.0 194 40.7
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-23 114.0 194 40.7
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.1e-23 113.2 184 41.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 2.1e-23 113.2 188 39.9
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 3.5e-23 112.5 215 39.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.6e-23 112.1 179 45.3
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 7.9e-23 111.3 180 41.7
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.0e-22 110.9 176 42.6
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.0e-22 110.9 181 42.5
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.3e-22 110.5 174 40.2
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.9e-22 109.0 166 44.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.9e-22 109.0 164 42.7
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 1.9e-21 106.7 177 42.9
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-21 106.7 168 42.3
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.9e-21 106.7 180 44.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-21 106.7 170 37.1
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 7.4e-21 104.8 182 43.4
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.6e-21 104.4 141 46.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.8e-19 100.1 174 37.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.1e-19 99.4 231 38.1
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.9e-17 92.8 181 36.5
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.9e-17 92.0 172 39.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.4e-17 91.3 159 40.9
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.4e-16 90.5 173 38.7
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.5e-15 85.9 166 37.3
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.0e-14 84.3 146 41.1
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.0e-14 84.3 155 36.8
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.3e-14 84.0 175 37.1
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 8.7e-14 81.3 131 37.4
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 4.3e-13 79.0 181 35.9
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 4.3e-13 79.0 206 35.4
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.3e-13 79.0 150 35.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.3e-12 77.4 173 34.1
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.3e-12 77.4 235 31.9
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.8e-12 76.3 102 44.1
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-12 75.5 129 39.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 8.2e-12 74.7 179 34.6
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-11 72.8 109 39.4
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 5.3e-11 72.0 198 35.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-09 67.4 145 34.5
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.4e-08 63.9 197 33.0
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.1e-07 60.1 143 33.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.8e-06 57.0 81 38.3
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 2.3e-06 56.6 122 36.9
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 5.1e-06 55.5 116 32.8
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.7e-06 55.1 55 54.5


User provided reference genes

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