Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.5e-77 292.7 142 100.0
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.5e-77 292.7 142 100.0
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 3.8e-73 278.1 142 94.4
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.9e-71 270.4 142 90.1
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.8e-70 269.2 142 90.1
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 87.3
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.4e-67 259.6 142 85.9
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 2.4e-67 258.8 142 85.2
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 6.9e-67 257.3 142 84.5
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.2e-66 256.5 142 84.5
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.5e-66 256.1 142 83.8
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.5e-66 256.1 142 85.2
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.4e-66 255.0 142 83.8
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.4e-66 255.0 142 83.8
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 3.4e-66 255.0 142 83.8
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.3e-65 253.1 142 83.1
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.7e-65 252.7 142 83.1
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 1.7e-65 252.7 142 83.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 83.1
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 83.1
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 4.9e-65 251.1 142 83.8
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.4e-64 249.6 142 82.4
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.4e-64 249.6 142 82.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.9e-64 249.2 142 81.7
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 81.0
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 81.0
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 1.2e-63 246.5 142 81.0
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 2.1e-63 245.7 142 81.7
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 80.3
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 6.0e-63 244.2 142 80.3
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.3e-62 242.3 142 78.2
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.3e-60 236.5 142 76.1
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.3e-60 236.5 142 76.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 2.1e-60 235.7 191 63.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.8e-60 235.3 142 76.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 75.4
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 75.4
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 76.1
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 6.3e-60 234.2 140 77.1
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 6.3e-60 234.2 142 74.6
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 75.4
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 3.1e-59 231.9 142 75.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 74.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 75.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 6.9e-59 230.7 141 73.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.4e-58 228.4 140 75.0
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 4.5e-58 228.0 142 72.5
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 5.9e-58 227.6 141 73.8
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.6e-58 227.3 140 74.3
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 74.6
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 2.2e-57 225.7 141 75.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 74.6
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 73.2
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 73.9
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 74.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 71.8
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 6.5e-57 224.2 142 71.1
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 71.8
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.1e-56 223.4 139 74.8
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 72.5
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.4e-56 223.0 142 73.9
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 73.9
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 71.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 73.9
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 2.5e-56 222.2 142 73.9
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 69.7
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.2e-56 221.9 142 71.8
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.2e-56 221.5 142 72.5
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 5.5e-56 221.1 141 71.6
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 5.5e-56 221.1 142 69.0
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 73.2
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 71.1
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 9.3e-56 220.3 142 69.0
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 69.0
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 71.1
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 71.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.6e-55 219.5 141 73.0
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 2.1e-55 219.2 139 71.9
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.6e-55 218.4 141 73.0
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.6e-55 218.4 141 72.3
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 7.9e-55 217.2 141 69.5
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-54 216.9 142 68.3
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.8e-54 216.1 142 70.4
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 3.0e-54 215.3 141 69.5
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.0e-54 215.3 141 70.2
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.9e-54 214.9 141 70.2
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.9e-54 214.9 141 70.2
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.9e-54 214.9 142 77.5
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.5e-53 212.2 141 70.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.3e-53 211.8 141 70.9
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.3e-53 211.5 140 68.6
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.3e-53 211.5 142 69.0
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 7.4e-53 210.7 142 66.9
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.3e-52 209.9 142 68.3
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.2e-52 209.1 142 67.6
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 2.2e-52 209.1 138 69.6
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 4.8e-52 208.0 142 69.0
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.2e-52 207.2 140 65.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 8.2e-52 207.2 135 70.4
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 8.2e-52 207.2 142 69.0
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.1e-51 206.8 142 69.7
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.8e-51 206.1 140 65.7
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 66.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.1e-51 205.3 140 67.9
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 69.0
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.1e-51 204.9 140 65.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 6.9e-51 204.1 142 66.9
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.9e-51 204.1 158 61.4
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 6.9e-51 204.1 142 65.5
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.2e-50 203.4 140 67.1
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.0e-50 202.6 170 58.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.6e-50 202.2 137 65.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.6e-50 202.2 141 68.1
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 3.4e-50 201.8 193 54.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 3.4e-50 201.8 193 54.9
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 5.9e-50 201.1 140 64.3
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.0e-49 200.3 142 64.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.3e-49 199.9 138 66.7
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 2.2e-49 199.1 141 67.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 2.9e-49 198.7 141 66.0
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.0e-49 198.0 141 67.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 8.5e-49 197.2 140 65.7
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 8.5e-49 197.2 137 65.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 1.1e-48 196.8 157 61.8
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 3.2e-48 195.3 142 66.2
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.2e-48 194.9 137 68.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 7.2e-48 194.1 143 63.6
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.6e-47 193.0 138 63.8
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 67.8
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 4.6e-47 191.4 142 65.5
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 4.6e-47 191.4 140 62.9
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 6.1e-47 191.0 117 76.1
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.9e-47 190.7 142 65.5
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 63.4
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.3e-45 185.3 135 63.0
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 8.2e-44 180.6 140 61.4
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 8.2e-44 180.6 142 61.3
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 9.1e-43 177.2 143 62.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.9e-42 174.5 175 51.4
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.9e-41 172.2 138 59.4
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.4e-38 163.3 108 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 3.0e-38 162.2 140 53.6
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.1e-37 160.2 137 56.2
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.3e-37 158.7 137 55.5
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 5.7e-37 157.9 141 55.3
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.7e-36 156.4 142 54.9
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.7e-36 155.2 139 55.4
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 9.1e-35 150.6 285 33.7
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 1.6e-34 149.8 126 57.1
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.6e-34 149.1 141 53.2
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 8.5e-33 144.1 125 55.2
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.7e-31 139.0 129 51.9
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.6e-31 138.7 129 51.9
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.2e-25 119.4 127 45.7
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 4.2e-24 115.2 73 69.9
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 7.2e-24 114.4 80 65.0
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 2.7e-23 112.5 80 65.0
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 1.0e-22 110.5 115 53.0
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 3.7e-20 102.1 121 44.6
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 48.6
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 48.6
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.3e-20 101.3 109 48.6
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.8e-19 99.8 67 68.7
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.1e-19 98.6 67 65.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 7.0e-19 97.8 117 42.7
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 3.5e-18 95.5 112 50.0
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.0e-17 94.0 77 57.1
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.3e-17 93.6 59 69.5
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.3e-17 93.6 59 69.5
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.7e-17 93.2 87 54.0
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 2.5e-16 89.4 77 53.2
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.6e-15 85.5 115 47.0
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 4.4e-13 78.6 68 52.9
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 2.2e-12 76.3 68 51.5
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 2.7e-10 69.3 32 93.8
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 1.7e-09 66.6 71 52.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 2.9e-09 65.9 39 66.7
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.9e-08 63.2 108 35.2
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 3.3e-08 62.4 43 65.1
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 5.6e-08 61.6 42 64.3
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.6e-07 60.1 38 71.1
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.3e-06 56.2 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.0e-06 55.5 36 66.7
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 5.2e-06 55.1 34 67.6
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 8.9e-06 54.3 34 64.7


User provided reference genes

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