Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 1.3e-117 426.4 212 100.0
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.4e-102 375.2 207 89.9
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.4e-102 375.2 207 89.9
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.7e-101 372.9 209 88.5
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.9e-101 372.1 206 89.3
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 3.6e-96 355.1 215 81.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 8.7e-90 334.0 216 76.4
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 1.1e-89 333.6 215 79.5
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 1.1e-87 327.0 219 79.0
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 9.0e-87 323.9 218 78.9
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 2.6e-86 322.4 218 78.4
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 7.6e-86 320.9 210 74.8
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 7.1e-84 314.3 219 76.7
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 9.3e-84 313.9 219 76.7
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 5.8e-78 294.7 164 87.8
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 7.6e-78 294.3 156 89.7
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 1.1e-73 280.4 188 72.9
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 5.6e-73 278.1 196 68.9
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 8.1e-72 274.2 195 68.2
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 8.1e-72 274.2 204 65.7
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 2.4e-71 272.7 191 67.5
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 2.4e-71 272.7 191 67.5
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 3.1e-71 272.3 193 66.8
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 4.0e-71 271.9 201 67.2
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 5.3e-71 271.6 191 67.5
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 2.0e-70 269.6 209 64.1
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 1.0e-69 267.3 203 64.5
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 3.8e-69 265.4 209 64.1
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 8.4e-69 264.2 192 66.7
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 1.1e-68 263.8 198 64.6
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 1.9e-68 263.1 217 61.8
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 1.9e-68 263.1 209 63.6
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 2.5e-68 262.7 197 66.0
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 4.2e-68 261.9 212 63.2
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 4.2e-68 261.9 193 65.3
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 5.5e-68 261.5 179 70.4
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 1.2e-67 260.4 186 67.7
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 1.6e-67 260.0 205 63.4
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 2.7e-67 259.2 205 63.9
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 3.5e-67 258.8 196 65.8
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 3.5e-67 258.8 196 65.3
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 4.6e-67 258.5 201 64.2
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 7.9e-67 257.7 212 63.2
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 1.0e-66 257.3 191 66.5
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 1.3e-66 256.9 219 63.0
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 1.8e-66 256.5 207 60.4
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 1.8e-66 256.5 207 60.4
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 1.8e-66 256.5 211 60.7
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 3.9e-66 255.4 205 62.4
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 5.1e-66 255.0 211 60.7
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 6.7e-66 254.6 207 61.8
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 6.7e-66 254.6 196 65.3
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 8.7e-66 254.2 192 62.0
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 1.1e-65 253.8 200 63.5
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 1.1e-65 253.8 213 62.4
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 1.1e-65 253.8 194 63.9
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 2.5e-65 252.7 197 61.9
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 4.3e-65 251.9 195 63.1
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 4.3e-65 251.9 207 61.4
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 4.3e-65 251.9 188 64.9
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 9.6e-65 250.8 211 61.6
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 1.3e-64 250.4 198 65.7
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 1.3e-64 250.4 200 61.5
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 2.1e-64 249.6 198 63.6
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 2.1e-64 249.6 194 66.0
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 2.8e-64 249.2 207 61.8
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 4.8e-64 248.4 188 64.4
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.1e-63 247.3 176 68.2
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 1.1e-63 247.3 206 59.7
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.8e-63 246.5 177 67.2
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.8e-63 246.5 194 61.3
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 1.8e-63 246.5 192 59.9
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 3.1e-63 245.7 199 58.8
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 3.1e-63 245.7 218 58.7
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 3.1e-63 245.7 188 64.4
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 2.0e-62 243.0 197 61.9
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 2.0e-62 243.0 199 61.3
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 5.0e-61 238.4 181 64.1
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.1e-60 237.3 187 63.1
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 1.9e-60 236.5 199 62.8
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 1.8e-58 229.9 196 58.7
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 1.8e-58 229.9 196 58.2
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 7.4e-57 224.6 175 64.6
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 2.4e-55 219.5 181 59.7
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 2.0e-54 216.5 218 54.6
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 3.4e-54 215.7 203 59.6
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.5e-53 211.5 120 87.5
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 1.3e-48 197.2 173 54.3
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 2.2e-48 196.4 188 54.3
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 5.0e-45 185.3 218 46.8
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 6.1e-43 178.3 177 49.7
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 3.5e-38 162.5 87 90.8
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 1.0e-37 161.0 174 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.9e-37 159.5 159 52.8
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 8.5e-37 157.9 175 48.6
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 5.2e-34 148.7 238 37.0
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 5.2e-34 148.7 187 45.5
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 1.1e-33 147.5 101 70.3
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.7e-32 143.7 75 88.0
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 1.9e-28 130.2 142 47.9
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 2.3e-26 123.2 98 60.2
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 2.0e-22 110.2 99 54.5
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 2.7e-22 109.8 188 39.9
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 3.6e-19 99.4 85 55.3
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 6.1e-19 98.6 147 39.5
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 5.2e-18 95.5 150 36.7
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 9.8e-17 91.3 81 60.5
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.5e-12 77.4 61 59.0
Mapoly0025s0077 Marchantia polymorpha HOM05D000224 ORTHO05D001489 1.1e-07 61.2 105 34.3
Mapoly0069s0018 Marchantia polymorpha HOM05D000224 ORTHO05D001489 1.1e-07 61.2 116 29.3
PGR102G1923 Punica granatum HOM05D000224 ORTHO05D000337 3.2e-07 59.7 139 33.1
Cpa.g.sc1245.1 Carica papaya HOM05D000224 ORTHO05D000337 5.4e-07 58.9 131 31.3
Glyma.08G247700 Glycine max HOM05D000224 ORTHO05D001489 9.2e-07 58.2 101 28.7
BcaB03g11988 Brassica carinata HOM05D000224 ORTHO05D001489 1.6e-06 57.4 128 29.7
ClCG01G016590 Citrullus lanatus HOM05D000224 ORTHO05D000337 1.6e-06 57.4 86 37.2
Glyma.11G059551 Glycine max HOM05D000224 ORTHO05D000337 1.6e-06 57.4 106 32.1
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 2.0e-06 57.0 30 76.7
DCAR_024125 Daucus carota HOM05D000224 ORTHO05D001489 2.0e-06 57.0 100 35.0
Cpa.g.sc2.285 Carica papaya HOM05D000224 ORTHO05D002442 2.7e-06 56.6 104 32.7
Thecc.02G094500 Theobroma cacao HOM05D000224 ORTHO05D000337 2.7e-06 56.6 100 33.0
CANSAT01G2733 Cannabis sativa HOM05D000224 ORTHO05D000337 3.5e-06 56.2 121 33.1
Cpa.g.sc202.19 Carica papaya HOM05D000224 ORTHO05D000337 3.5e-06 56.2 128 28.1
ECA246G4539 Erigeron canadensis HOM05D000224 ORTHO05D000337 3.5e-06 56.2 106 31.1
BolC4t26852H Brassica oleracea HOM05D000224 ORTHO05D000337 5.9e-06 55.5 116 28.4
Sed0022011 Sechium edule HOM05D000224 ORTHO05D000337 5.9e-06 55.5 87 35.6
CSS0018791 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D007921 7.8e-06 55.1 118 34.7
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 7.8e-06 55.1 132 33.3
VMungo1215G2094 Vigna mungo HOM05D000224 ORTHO05D000337 7.8e-06 55.1 106 31.1


User provided reference genes

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