Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 7.2e-110 401.0 264 100.0
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 5.0e-87 325.1 265 86.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.6e-77 293.5 269 74.3
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.1e-70 270.8 265 68.3
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.2e-67 260.8 270 65.6
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 4.1e-65 252.3 263 63.9
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 6.0e-64 248.4 278 59.7
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 6.0e-64 248.4 274 60.9
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.7e-63 246.9 274 60.6
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.7e-63 246.9 274 60.6
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.6e-62 241.9 277 59.9
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 4.7e-61 238.8 278 59.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 3.1e-60 236.1 265 60.8
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.7e-55 220.3 278 54.0
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.5e-51 207.2 277 53.8
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.7e-42 177.2 288 47.9
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.2e-42 176.8 277 49.1
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.4e-41 173.3 282 48.6
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 2.4e-36 156.8 278 47.8
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 6.9e-36 155.2 285 49.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.2e-35 154.5 285 47.7
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 2.0e-35 153.7 276 44.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 3.4e-35 152.9 294 43.9
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 5.8e-35 152.1 275 49.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.2e-34 150.2 239 49.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 3.2e-33 146.4 275 44.7
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.1e-32 143.7 275 44.7
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-31 141.0 275 46.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.3e-31 141.0 279 45.9
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 9.6e-30 134.8 273 45.1
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 4.8e-29 132.5 274 43.4
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 4.8e-29 132.5 266 39.8
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 6.2e-29 132.1 266 39.8
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.1e-28 129.8 277 37.9
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 5.3e-28 129.0 262 40.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 2.6e-27 126.7 257 41.2
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 5.8e-27 125.6 263 40.3
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.8e-26 122.9 261 40.6
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 4.9e-26 122.5 259 47.1
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 6.4e-26 122.1 262 40.1
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 8.4e-26 121.7 265 39.6
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 8.4e-26 121.7 260 40.8
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.9e-25 120.6 262 39.7
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.4e-25 120.2 262 40.5
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.4e-25 120.2 263 39.9
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.2e-25 119.8 264 39.8
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 4.2e-25 119.4 258 48.1
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 7.1e-25 118.6 260 38.8
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.1e-24 117.1 264 37.1
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.7e-24 116.7 259 38.6
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 6.0e-24 115.5 241 41.9
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.3e-23 114.4 263 37.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 1.8e-23 114.0 260 38.1
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 2.5e-22 110.2 262 36.6
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 3.3e-22 109.8 272 36.8
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 3.3e-22 109.8 233 42.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 5.6e-22 109.0 278 34.9
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 5.6e-22 109.0 259 38.2
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 9.6e-22 108.2 264 38.3
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.1e-21 107.1 261 38.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.8e-21 106.7 262 37.0
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 3.7e-21 106.3 276 34.8
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.8e-21 105.9 269 36.4
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-20 104.8 233 39.5
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 3.1e-20 103.2 238 39.1
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 4.0e-20 102.8 274 35.0
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.3e-20 102.4 261 36.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 6.9e-20 102.1 227 37.0
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.9e-20 102.1 224 39.3
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 6.9e-20 102.1 278 36.0
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.5e-19 100.9 258 36.8
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 2.6e-19 100.1 263 35.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 3.4e-19 99.8 263 36.1
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 4.5e-19 99.4 276 35.5
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 5.8e-19 99.0 277 35.4
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.6e-19 98.6 224 38.8
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 7.6e-19 98.6 228 38.2
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 1.3e-18 97.8 277 34.3
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-18 97.8 260 36.9
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.3e-18 97.8 258 36.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.3e-18 97.8 269 36.8
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 3.8e-18 96.3 259 37.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 6.5e-18 95.5 274 39.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 8.4e-18 95.1 264 35.6
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 8.4e-18 95.1 258 37.2
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-17 94.7 264 34.8
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-17 94.7 230 36.1
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.4e-17 94.4 268 36.6
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.4e-17 94.4 261 37.2
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.9e-17 94.0 235 36.6
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.9e-17 94.0 261 34.9
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.2e-17 93.2 236 37.3
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-17 93.2 237 36.3
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.2e-17 93.2 237 36.3
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.0e-15 88.2 226 37.2
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.8e-15 87.4 237 34.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 2.3e-15 87.0 236 36.0
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 2.3e-15 87.0 219 37.0
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.3e-15 87.0 258 34.1
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 8.7e-15 85.1 256 35.2
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 8.7e-15 85.1 286 33.6
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.5e-14 83.6 256 45.3
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.5e-14 83.6 237 35.0
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.5e-14 83.6 235 36.2
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.3e-14 82.8 222 36.0
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.7e-14 82.4 231 37.7
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.6e-13 80.9 226 35.0
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.1e-13 80.5 120 46.7
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 3.7e-13 79.7 240 32.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 4.8e-13 79.3 215 34.9
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.4e-12 77.8 269 29.0
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 2.4e-12 77.0 224 35.3
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 4.1e-12 76.3 231 33.8
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.2e-11 74.7 230 32.6
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.6e-11 73.6 216 32.9
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.9e-11 72.4 216 32.9
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 5.9e-11 72.4 123 44.7
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.0e-10 71.6 260 41.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.0e-10 71.6 293 39.6
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.3e-10 71.2 183 43.7
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.7e-10 70.9 295 37.6
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.2e-10 70.5 216 32.9
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 3.8e-10 69.7 83 54.2
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 5.0e-10 69.3 83 54.2
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.1e-09 68.2 276 30.1
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.4e-09 67.8 207 33.3
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.2e-09 66.6 96 47.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 3.2e-09 66.6 123 40.7
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.2e-09 66.2 207 34.3
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.5e-09 65.9 200 33.5
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 7.2e-09 65.5 95 48.4
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.2e-08 64.7 186 34.9
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.7e-08 63.5 125 40.0
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.1e-06 58.2 224 28.6
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 4.3e-06 56.2 198 29.3
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 5.7e-06 55.8 201 31.3


User provided reference genes

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