Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 2.2e-276 955.3 580 100.0
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 1.7e-217 759.6 578 80.4
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 5.0e-172 608.6 583 65.9
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 6.7e-169 598.2 495 70.7
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 1.6e-154 550.4 583 58.8
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 8.8e-153 544.7 582 58.8
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 7.7e-149 531.6 569 59.1
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 1.0e-148 531.2 569 58.3
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.3e-148 530.8 578 62.3
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 1.4e-137 494.2 586 54.1
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 1.0e-132 478.0 587 52.5
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.3e-132 477.6 581 58.0
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 5.0e-132 475.7 587 52.6
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 3.4e-128 463.0 584 54.5
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 1.7e-127 460.7 563 55.1
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 3.7e-127 459.5 608 49.5
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 7.1e-126 455.3 575 53.9
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 4.6e-117 426.0 589 49.7
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 1.3e-116 424.5 586 51.0
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 2.6e-112 410.2 480 56.7
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 3.0e-108 396.7 586 47.8
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 7.3e-107 392.1 586 47.3
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 2.1e-106 390.6 587 47.5
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 9.0e-105 385.2 588 46.9
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 2.2e-103 380.6 572 47.0
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 2.5e-91 340.5 580 45.5
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 6.9e-81 305.8 591 40.8
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 1.2e-80 305.1 591 39.6
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 3.4e-80 303.5 593 43.3
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 5.0e-79 299.7 613 43.4
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 6.1e-77 292.7 601 37.1
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.8e-76 291.2 607 37.9
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 8.7e-76 288.9 601 39.3
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 3.7e-74 283.5 607 35.9
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 6.3e-74 282.7 611 42.9
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.1e-73 282.0 611 35.5
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.8e-73 281.2 581 37.9
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 2.4e-73 280.8 594 35.2
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 9.0e-73 278.9 569 37.1
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 1.5e-72 278.1 600 42.5
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 1.5e-72 278.1 568 36.4
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 3.4e-72 276.9 575 37.2
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 4.5e-72 276.6 610 34.6
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 7.7e-72 275.8 587 42.6
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.4e-70 271.6 593 38.3
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 1.9e-70 271.2 585 38.5
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 2.7e-69 267.3 593 41.1
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 6.1e-69 266.2 615 36.1
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 6.1e-69 266.2 576 35.8
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 4.3e-67 260.0 584 40.6
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 4.3e-67 260.0 584 40.6
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.8e-66 257.3 567 36.9
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 2.9e-63 247.3 582 34.5
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 1.9e-62 244.6 583 39.1
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 2.5e-62 244.2 584 41.1
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 2.3e-60 237.7 591 35.2
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 3.9e-60 236.9 565 39.1
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 1.1e-59 235.3 605 39.5
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 5.7e-59 233.0 573 39.1
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 7.4e-59 232.6 599 39.4
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 7.4e-59 232.6 586 37.0
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 2.8e-58 230.7 578 34.1
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 8.2e-58 229.2 561 39.8
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 2.0e-56 224.6 601 31.8
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 2.6e-56 224.2 557 33.4
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 7.7e-56 222.6 571 35.4
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 1.0e-55 222.2 625 37.6
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 3.8e-55 220.3 571 39.2
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 6.5e-55 219.5 482 35.9
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 8.5e-55 219.2 571 39.1
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.1e-54 218.8 571 39.1
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 4.2e-54 216.9 571 38.7
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.6e-53 213.8 603 34.0
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 4.7e-53 213.4 572 40.7
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 1.0e-52 212.2 579 38.3
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.8e-52 211.5 568 38.9
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.3e-52 211.1 571 32.0
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 4.0e-52 210.3 574 36.4
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 4.0e-52 210.3 585 33.3
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 6.7e-52 209.5 578 36.3
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 1.5e-51 208.4 602 31.4
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.0e-51 208.0 558 39.4
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 2.0e-51 208.0 582 36.3
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 7.5e-51 206.1 477 41.3
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 9.7e-51 205.7 565 33.6
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 1.3e-50 205.3 601 35.3
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 1.7e-50 204.9 482 34.6
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 4.1e-49 200.3 569 37.3
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 1.6e-48 198.4 576 34.9
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 3.5e-48 197.2 576 36.3
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.5e-48 197.2 563 34.3
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 1.9e-46 191.4 565 31.3
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 2.5e-46 191.0 576 30.6
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 1.2e-45 188.7 532 32.9
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.6e-45 188.3 568 37.7
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 8.0e-45 186.0 553 32.4
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 3.0e-44 184.1 557 34.6
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.5e-43 181.8 585 27.0
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 5.7e-43 179.9 579 32.0
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 5.7e-43 179.9 583 31.0
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.7e-42 178.3 579 37.0
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 3.7e-42 177.2 534 30.3
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 8.3e-42 176.0 574 32.1
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 1.1e-41 175.6 531 39.2
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.8e-41 174.9 579 32.0
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 1.8e-41 174.9 619 35.4
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 4.1e-41 173.7 588 32.8
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 4.1e-41 173.7 573 37.9
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 5.4e-41 173.3 565 28.7
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 4.5e-40 170.2 593 32.2
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 1.0e-39 169.1 459 35.5
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 1.3e-39 168.7 548 29.6
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 2.9e-39 167.5 587 37.0
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.5e-38 165.2 566 32.9
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 2.5e-38 164.5 539 30.4
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 1.2e-37 162.2 550 28.2
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 2.7e-37 161.0 581 31.5
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 5.2e-36 156.8 567 35.3
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 5.7e-35 153.3 601 30.8
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 4.9e-34 150.2 326 37.4
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 6.3e-34 149.8 581 31.3
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 1.2e-32 145.6 571 33.5
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 1.7e-31 141.7 383 42.0
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 1.9e-30 138.3 554 34.5
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 4.7e-29 133.7 481 28.9
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 3.0e-28 131.0 271 34.3
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 2.0e-27 128.3 585 30.3
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 2.6e-27 127.9 338 42.3
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 6.4e-26 123.2 546 25.1
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 2.0e-24 118.2 543 34.3
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 1.3e-23 115.5 471 31.6
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 7.3e-22 109.8 300 43.0
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 4.4e-19 100.5 520 28.8
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 4.9e-18 97.1 536 31.3
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 9.2e-17 92.8 478 27.0
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 3.5e-16 90.9 401 31.2
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 4.6e-16 90.5 583 22.5
CARHR214590 Cardamine hirsuta HOM05D004905 ORTHO05D005456 2.3e-15 88.2 73 60.3
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 1.1e-14 85.9 176 36.4
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 5.6e-14 83.6 524 23.7
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 5.6e-14 83.6 304 37.5
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 7.3e-14 83.2 191 31.4
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 9.5e-14 82.8 184 38.0
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 2.1e-13 81.6 582 22.0
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 4.0e-12 77.4 547 32.0
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.2e-11 75.9 524 23.5
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 7.5e-11 73.2 582 28.0
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 7.5e-11 73.2 222 27.5
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 7.5e-11 73.2 567 23.3
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 4.9e-10 70.5 174 29.9
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.4e-09 68.9 262 25.2
THA.LOC104817709 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 9.2e-09 66.2 594 24.6
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 2.1e-08 65.1 528 25.9
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 3.5e-08 64.3 305 27.5
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 4.6e-08 63.9 537 26.4
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 7.8e-08 63.2 526 26.8
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 1.3e-07 62.4 453 26.3
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 1.7e-07 62.0 432 27.1
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 3.0e-07 61.2 194 30.9
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 3.0e-07 61.2 574 20.2
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 6.6e-07 60.1 296 28.0
BolC3t14044H Brassica oleracea HOM05D001827 ORTHO05D001790 8.6e-07 59.7 581 28.2
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 1.5e-06 58.9 583 25.0
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.5e-06 58.2 628 22.9
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 3.3e-06 57.8 578 26.6
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 3.3e-06 57.8 578 26.5
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 7.3e-06 56.6 580 21.9
SEGI_23448 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 9.5e-06 56.2 250 24.4


User provided reference genes

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