Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 5.5e-122 441.0 231 100.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 7.0e-93 344.4 231 81.0
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 5.2e-80 301.6 230 70.4
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 4.7e-73 278.5 235 71.5
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 5.4e-69 265.0 232 71.1
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 6.0e-68 261.5 235 67.2
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 2.1e-65 253.1 236 66.9
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 2.1e-65 253.1 236 66.9
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.1e-64 250.8 234 67.1
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 2.3e-64 249.6 236 66.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 5.1e-59 231.9 186 69.4
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 5.6e-58 228.4 223 65.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 5.2e-48 195.3 192 58.3
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.1e-44 183.3 257 46.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 4.6e-44 182.2 254 53.5
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.0e-39 166.8 250 52.4
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 4.9e-38 162.2 258 49.2
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 1.1e-37 161.0 236 51.7
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.9e-37 160.2 264 47.3
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 3.2e-37 159.5 259 47.9
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-35 153.7 268 47.0
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 1.9e-34 150.2 196 51.0
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 1.9e-34 150.2 196 51.0
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 1.9e-34 150.2 246 49.6
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 7.3e-34 148.3 196 51.0
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 3.6e-33 146.0 246 48.8
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 4.9e-30 135.6 225 47.1
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 1.2e-28 131.0 241 43.6
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 9.3e-13 78.2 160 37.5
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.6e-12 77.4 171 38.0
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 2.7e-12 76.6 162 42.0
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 3.5e-12 76.3 187 34.2
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 4.6e-12 75.9 160 38.1
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 4.6e-12 75.9 170 37.1
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-11 74.3 178 36.5
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.9e-11 72.8 183 36.1
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 2.5e-10 70.1 167 37.1
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.3e-10 69.7 168 36.3
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 3.3e-10 69.7 167 38.9
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 4.3e-10 69.3 102 47.1
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 5.7e-10 68.9 156 36.5
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 7.4e-10 68.6 168 36.3
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 7.4e-10 68.6 160 35.6
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.3e-09 67.8 92 48.9
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.6e-09 67.4 183 30.1
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.6e-09 67.4 186 33.3
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.6e-09 67.4 163 35.0
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 2.2e-09 67.0 175 30.3
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.2e-09 67.0 182 35.2
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.2e-09 67.0 159 32.1
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 2.8e-09 66.6 161 36.0
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 3.7e-09 66.2 94 44.7
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.8e-09 65.9 164 35.4
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 6.3e-09 65.5 101 41.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 6.3e-09 65.5 181 32.0
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 8.2e-09 65.1 168 36.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 8.2e-09 65.1 96 39.6
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 1.1e-08 64.7 97 44.3
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.4e-08 64.3 167 34.1
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.4e-08 64.3 93 45.2
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 2.4e-08 63.5 94 50.0
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.4e-08 63.5 158 37.3
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.1e-08 63.2 97 46.4
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 5.3e-08 62.4 95 46.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 5.3e-08 62.4 95 46.3
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 6.9e-08 62.0 93 46.2
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 6.9e-08 62.0 92 43.5
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 9.0e-08 61.6 160 35.6
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.5e-07 60.8 96 44.8
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.5e-07 60.8 91 46.2
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 1.5e-07 60.8 169 32.5
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 2.0e-07 60.5 96 42.7
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 4.5e-07 59.3 91 42.9
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.5e-07 59.3 96 41.7
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 5.9e-07 58.9 99 41.4
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 7.7e-07 58.5 93 40.9
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 7.7e-07 58.5 92 43.5
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 7.7e-07 58.5 132 33.3
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.0e-06 58.2 95 40.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.0e-06 58.2 126 36.5
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 1.3e-06 57.8 177 32.2
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 1.7e-06 57.4 131 36.6
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.2e-06 57.0 155 31.0
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.2e-06 57.0 96 43.8
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 2.9e-06 56.6 92 42.4
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.9e-06 56.6 103 38.8
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 2.9e-06 56.6 90 41.1
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 2.9e-06 56.6 91 41.8
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 5.0e-06 55.8 157 29.9
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 6.5e-06 55.5 90 42.2


User provided reference genes

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